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Michael A. Beer
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Displaying results 1-9 of
9
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Corrigendum
:
Corrigendum: Machine learning identifies activation of RUNX/AP-1 as drivers of mesenchymal and fibrotic regulatory programs in gastric cancer
Milad Razavi-Mohseni
,
Weitai Huang
,
Yu A. Guo
,
Dustin Shigaki
,
Shamaine Wei Ting Ho
,
Patrick Tan
,
Anders J. Skanderup
,
and
Michael A. Beer
Genome Res.
February 2026
36
:
432
;
doi:
10.1101/gr.281294.125
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Research
:
Evolutionary dynamics of polyadenylation signals and their recognition strategies in protists
Marcin P. Sajek
,
Danielle Y. Bilodeau
,
Michael A. Beer
,
Emma Horton
,
Yukiko Miyamoto
,
Katrina B. Velle
,
Lars Eckmann
,
Lillian Fritz-Laylin
,
Olivia S. Rissland
,
and
Neelanjan Mukherjee
Genome Res.
October 2024
34
:
1570
-
1581
;
Published in Advance
September 26, 2024
,
doi:
10.1101/gr.279526.124
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Research
:
Machine learning identifies activation of RUNX/AP-1 as drivers of mesenchymal and fibrotic regulatory programs in gastric cancer
Milad Razavi-Mohseni
,
Weitai Huang
,
Yu A. Guo
,
Dustin Shigaki
,
Shamaine Wei Ting Ho
,
Patrick Tan
,
Anders J. Skanderup
,
and
Michael A. Beer
Genome Res.
May 2024
34
:
680
-
695
;
Published in Advance
May 22, 2024
,
doi:
10.1101/gr.278565.123
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Method
:
Sequence-based correction of barcode bias in massively parallel reporter assays
Dongwon Lee
,
Ashish Kapoor
,
Changhee Lee
,
Michael Mudgett
,
Michael A. Beer
,
and
Aravinda Chakravarti
Genome Res.
September 2021
31
:
1638
-
1645
;
Published in Advance
July 20, 2021
,
doi:
10.1101/gr.268599.120
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Research
:
Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
Maxim Pimkin
,
Andrew V. Kossenkov
,
Tejaswini Mishra
,
Christapher S. Morrissey
,
Weisheng Wu
,
Cheryl A. Keller
,
Gerd A. Blobel
,
Dongwon Lee
,
Michael A. Beer
,
Ross C. Hardison
,
and
Mitchell J. Weiss
Genome Res.
December 2014
24
:
1932
-
1944
;
Published in Advance
October 15, 2014
,
doi:
10.1101/gr.164178.113
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Method
:
Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes
David U. Gorkin
,
Dongwon Lee
,
Xylena Reed
,
Christopher Fletez-Brant
,
Seneca L. Bessling
,
Stacie K. Loftus
,
Michael A. Beer
,
William J. Pavan
,
and
Andrew S. McCallion
Genome Res.
November 2012
22
:
2290
-
2301
;
Published in Advance
September 27, 2012
,
doi:
10.1101/gr.139360.112
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Method
:
Discriminative prediction of mammalian enhancers from DNA sequence
Dongwon Lee
,
Rachel Karchin
,
and
Michael A. Beer
Genome Res.
December 2011
21
:
2167
-
2180
;
Published in Advance
August 29, 2011
,
doi:
10.1101/gr.121905.111
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LETTER
:
Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at
phox2b
David M. McGaughey
,
Ryan M. Vinton
,
Jimmy Huynh
,
Amr Al-Saif
,
Michael A. Beer
,
and
Andrew S. McCallion
Genome Res.
February 2008
18
:
252
-
260
;
Published in Advance
December 10, 2007
,
doi:
10.1101/gr.6929408
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LETTER
:
Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation
Moshe Pritsker
,
Yir-Chung Liu
,
Michael A. Beer
,
and
Saeed Tavazoie
Genome Res.
January 2004
14
:
99
-
108
;
Published in Advance
December 12, 2003
,
doi:
10.1101/gr.1739204
Abstract
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