Searching journal content for Matthew Stephens in author.

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  1. Method: Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis
    • Chiaowen Joyce Hsiao,
    • PoYuan Tung,
    • John D. Blischak,
    • Jonathan E. Burnett,
    • Kenneth A. Barr,
    • Kushal K. Dey,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. April 2020 30: 611-621; Published in Advance April 20, 2020, doi:10.1101/gr.247759.118
    OPEN ACCESS ARTICLE
  2. Method: Co-expression networks reveal the tissue-specific regulation of transcription and splicing
    • Ashis Saha,
    • Yungil Kim,
    • Ariel D.H. Gewirtz,
    • Brian Jo,
    • Chuan Gao,
    • Ian C. McDowell,
    • The GTEx Consortium,
    • Barbara E. Engelhardt,
    • and Alexis Battle
    Genome Res. November 2017 27: 1843-1858; Published in Advance October 11, 2017, doi:10.1101/gr.216721.116
    OPEN ACCESS ARTICLE
  3. Method: Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
    • Fan Yang,
    • Jiebiao Wang,
    • The GTEx Consortium,
    • Brandon L. Pierce,
    • and Lin S. Chen
    Genome Res. November 2017 27: 1859-1871; Published in Advance October 11, 2017, doi:10.1101/gr.216754.116
  4. Research: Comparative RNA sequencing reveals substantial genetic variation in endangered primates
    • George H. Perry,
    • Páll Melsted,
    • John C. Marioni,
    • Ying Wang,
    • Russell Bainer,
    • Joseph K. Pickrell,
    • Katelyn Michelini,
    • Sarah Zehr,
    • Anne D. Yoder,
    • Matthew Stephens,
    • Jonathan K. Pritchard,
    • and Yoav Gilad
    Genome Res. April 2012 22: 602-610; Published in Advance December 29, 2011, doi:10.1101/gr.130468.111
    OPEN ACCESS ARTICLE
  5. Letter: Sex-specific and lineage-specific alternative splicing in primates
    • Ran Blekhman,
    • John C. Marioni,
    • Paul Zumbo,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. February 2010 20: 180-189; Published in Advance December 15, 2009, doi:10.1101/gr.099226.109
    OPEN ACCESS ARTICLE
  6. Methods: RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • John C. Marioni,
    • Christopher E. Mason,
    • Shrikant M. Mane,
    • Matthew Stephens,
    • and Yoav Gilad
    Genome Res. September 2008 18: 1509-1517; Published in Advance June 11, 2008, doi:10.1101/gr.079558.108
    OPEN ACCESS ARTICLE
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