Searching journal content for Matthew Holden in author.

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  1. Corrigendum: Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland
    • Sandra Reuter,
    • M. Estée Török,
    • Matthew T.G. Holden,
    • Rosy Reynolds,
    • Kathy E. Raven,
    • Beth Blane,
    • Tjibbe Donker,
    • Stephen D. Bentley,
    • David M. Aanensen,
    • Hajo Grundmann,
    • Edward J. Feil,
    • Brian G. Spratt,
    • Julian Parkhill,
    • and Sharon J. Peacock
    Genome Res. September 2017 27: 1622; doi:10.1101/gr.228155.117
    OPEN ACCESS ARTICLE
  2. Resource: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland
    • Sandra Reuter,
    • M. Estée Török,
    • Matthew T.G. Holden,
    • Rosy Reynolds,
    • Kathy E. Raven,
    • Beth Blane,
    • Tjibbe Donker,
    • Stephen D. Bentley,
    • David M. Aanensen,
    • Hajo Grundmann,
    • Edward J. Feil,
    • Brian G. Spratt,
    • Julian Parkhill,
    • and Sharon J. Peacock
    Genome Res. February 2016 26: 263-270; Published in Advance December 15, 2015, doi:10.1101/gr.196709.115
    OPEN ACCESS ARTICLE
  3. Research: Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection
    • Simon R. Harris,
    • Carl Robinson,
    • Karen F. Steward,
    • Katy S. Webb,
    • Romain Paillot,
    • Julian Parkhill,
    • Matthew T.G. Holden,
    • and Andrew S. Waller
    Genome Res. September 2015 25: 1360-1371; Published in Advance July 9, 2015, doi:10.1101/gr.189803.115
    OPEN ACCESS ARTICLE
  4. Erratum: Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles
    • Tannistha Nandi,
    • Matthew T.G. Holden,
    • Xavier Didelot,
    • Kurosh Mehershahi,
    • Justin A. Boddey,
    • Ifor Beacham,
    • Ian Peak,
    • John Harting,
    • Primo Baybayan,
    • Yan Guo,
    • Susana Wang,
    • Lee Chee How,
    • Bernice Sim,
    • Angela Essex-Lopresti,
    • Mitali Sarkar-Tyson,
    • Michelle Nelson,
    • Sophie Smither,
    • Catherine Ong,
    • Lay Tin Aw,
    • Chua Hui Hoon,
    • Stephen Michell,
    • David J. Studholme,
    • Richard Titball,
    • Swaine L. Chen,
    • Julian Parkhill,
    • and Patrick Tan
    Genome Res. April 2015 25: 608
    OPEN ACCESS ARTICLE
  5. Research: Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting
    • Steven Y.C. Tong,
    • Matthew T.G. Holden,
    • Emma K. Nickerson,
    • Ben S. Cooper,
    • Claudio U. Köser,
    • Anne Cori,
    • Thibaut Jombart,
    • Simon Cauchemez,
    • Christophe Fraser,
    • Vanaporn Wuthiekanun,
    • Janjira Thaipadungpanit,
    • Maliwan Hongsuwan,
    • Nicholas P. Day,
    • Direk Limmathurotsakul,
    • Julian Parkhill,
    • and Sharon J. Peacock
    Genome Res. January 2015 25: 111-118; Published in Advance December 9, 2014, doi:10.1101/gr.174730.114
    OPEN ACCESS ARTICLE
  6. Research: Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles
    • Tannistha Nandi,
    • Matthew T.G. Holden,
    • Xavier Didelot,
    • Kurosh Mehershahi,
    • Justin A. Boddey,
    • Ifor Beacham,
    • Ian Peak,
    • John Harting,
    • Primo Baybayan,
    • Yan Guo,
    • Susana Wang,
    • Lee Chee How,
    • Bernice Sim,
    • Angela Essex-Lopresti,
    • Mitali Sarkar-Tyson,
    • Michelle Nelson,
    • Sophie Smither,
    • Catherine Ong,
    • Lay Tin Aw,
    • Chua Hui Hoon,
    • Stephen Michell,
    • David J. Studholme,
    • Richard Titball,
    • Swaine L. Chen,
    • Julian Parkhill,
    • and Patrick Tan
    Genome Res. January 2015 25: 129-141; Published in Advance September 18, 2014, doi:10.1101/gr.177543.114
  7. Research: Predicting the virulence of MRSA from its genome sequence
    • Maisem Laabei,
    • Mario Recker,
    • Justine K. Rudkin,
    • Mona Aldeljawi,
    • Zeynep Gulay,
    • Tim J. Sloan,
    • Paul Williams,
    • Jennifer L. Endres,
    • Kenneth W. Bayles,
    • Paul D. Fey,
    • Vijaya Kumar Yajjala,
    • Todd Widhelm,
    • Erica Hawkins,
    • Katie Lewis,
    • Sara Parfett,
    • Lucy Scowen,
    • Sharon J. Peacock,
    • Matthew Holden,
    • Daniel Wilson,
    • Timothy D. Read,
    • Jean van den Elsen,
    • Nicholas K. Priest,
    • Edward J. Feil,
    • Laurence D. Hurst,
    • Elisabet Josefsson,
    • and Ruth C. Massey
    Genome Res. May 2014 24: 839-849; Published in Advance April 9, 2014, doi:10.1101/gr.165415.113
    OPEN ACCESS ARTICLE
  8. Research: A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
    • Matthew T.G. Holden,
    • Li-Yang Hsu,
    • Kevin Kurt,
    • Lucy A. Weinert,
    • Alison E. Mather,
    • Simon R. Harris,
    • Birgit Strommenger,
    • Franziska Layer,
    • Wolfgang Witte,
    • Herminia de Lencastre,
    • Robert Skov,
    • Henrik Westh,
    • Helena Žemličková,
    • Geoffrey Coombs,
    • Angela M. Kearns,
    • Robert L.R. Hill,
    • Jonathan Edgeworth,
    • Ian Gould,
    • Vanya Gant,
    • Jonathan Cooke,
    • Giles F. Edwards,
    • Paul R. McAdam,
    • Kate E. Templeton,
    • Angela McCann,
    • Zhemin Zhou,
    • Santiago Castillo-Ramírez,
    • Edward J. Feil,
    • Lyndsey O. Hudson,
    • Mark C. Enright,
    • Francois Balloux,
    • David M. Aanensen,
    • Brian G. Spratt,
    • J. Ross Fitzgerald,
    • Julian Parkhill,
    • Mark Achtman,
    • Stephen D. Bentley,
    • and Ulrich Nübel
    Genome Res. April 2013 23: 653-664; Published in Advance January 8, 2013, doi:10.1101/gr.147710.112
    OPEN ACCESS ARTICLE
  9. LETTER: Chlamydia trachomatis: Genome sequence analysis of lymphogranuloma venereum isolates
    • Nicholas R. Thomson,
    • Matthew T.G. Holden,
    • Caroline Carder,
    • Nicola Lennard,
    • Sarah J. Lockey,
    • Pete Marsh,
    • Paul Skipp,
    • C. David O’Connor,
    • Ian Goodhead,
    • Halina Norbertzcak,
    • Barbara Harris,
    • Doug Ormond,
    • Richard Rance,
    • Michael A. Quail,
    • Julian Parkhill,
    • Richard S. Stephens,
    • and Ian N. Clarke
    Genome Res. January 2008 18: 161-171; Published in Advance November 21, 2007, doi:10.1101/gr.7020108
  10. LETTER: Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes
    • Mohammed Sebaihia,
    • Michael W. Peck,
    • Nigel P. Minton,
    • Nicholas R. Thomson,
    • Matthew T.G. Holden,
    • Wilfrid J. Mitchell,
    • Andrew T. Carter,
    • Stephen D. Bentley,
    • David R. Mason,
    • Lisa Crossman,
    • Catherine J. Paul,
    • Alasdair Ivens,
    • Marjon H.J. Wells-Bennik,
    • Ian J. Davis,
    • Ana M. Cerdeño-Tárraga,
    • Carol Churcher,
    • Michael A. Quail,
    • Tracey Chillingworth,
    • Theresa Feltwell,
    • Audrey Fraser,
    • Ian Goodhead,
    • Zahra Hance,
    • Kay Jagels,
    • Natasha Larke,
    • Mark Maddison,
    • Sharon Moule,
    • Karen Mungall,
    • Halina Norbertczak,
    • Ester Rabbinowitsch,
    • Mandy Sanders,
    • Mark Simmonds,
    • Brian White,
    • Sally Whithead,
    • and Julian Parkhill
    Genome Res. July 2007 17: 1082-1092; Published in Advance May 22, 2007, doi:10.1101/gr.6282807
    OPEN ACCESS ARTICLE
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