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Manuel Irimia
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An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
Javier Tapial
,
Kevin C.H. Ha
,
Timothy Sterne-Weiler
,
André Gohr
,
Ulrich Braunschweig
,
Antonio Hermoso-Pulido
,
Mathieu Quesnel-Vallières
,
Jon Permanyer
,
Reza Sodaei
,
Yamile Marquez
,
Luca Cozzuto
,
Xinchen Wang
,
Melisa Gómez-Velázquez
,
Teresa Rayon
,
Miguel Manzanares
,
Julia Ponomarenko
,
Benjamin J. Blencowe
,
and
Manuel Irimia
Genome Res.
October 2017
27
:
1759
-
1768
;
Published in Advance
August 30, 2017
,
doi:
10.1101/gr.220962.117
Abstract
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:
Widespread intron retention in mammals functionally tunes transcriptomes
Ulrich Braunschweig
,
Nuno L. Barbosa-Morais
,
Qun Pan
,
Emil N. Nachman
,
Babak Alipanahi
,
Thomas Gonatopoulos-Pournatzis
,
Brendan Frey
,
Manuel Irimia
,
and
Benjamin J. Blencowe
Genome Res.
November 2014
24
:
1774
-
1786
;
Published in Advance
September 25, 2014
,
doi:
10.1101/gr.177790.114
Abstract
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Research
:
Extensive conservation of ancient microsynteny across metazoans due to
cis
-regulatory constraints
Manuel Irimia
,
Juan J. Tena
,
Maria S. Alexis
,
Ana Fernandez-Miñan
,
Ignacio Maeso
,
Ozren Bogdanović
,
Elisa de la Calle-Mustienes
,
Scott W. Roy
,
José L. Gómez-Skarmeta
,
and
Hunter B. Fraser
Genome Res.
December 2012
22
:
2356
-
2367
;
Published in Advance
June 21, 2012
,
doi:
10.1101/gr.139725.112
Abstract
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:
An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement
Ignacio Maeso
,
Manuel Irimia
,
Juan J. Tena
,
Esther González-Pérez
,
David Tran
,
Vydianathan Ravi
,
Byrappa Venkatesh
,
Sonsoles Campuzano
,
José Luis Gómez-Skarmeta
,
and
Jordi Garcia-Fernàndez
Genome Res.
April 2012
22
:
642
-
655
;
Published in Advance
January 10, 2012
,
doi:
10.1101/gr.132233.111
Abstract
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Letter
:
Complex selection on 5′ splice sites in intron-rich organisms
Manuel Irimia
,
Scott William Roy
,
Daniel E. Neafsey
,
Josep F. Abril
,
Jordi Garcia-Fernandez
,
and
Eugene V. Koonin
Genome Res.
November 2009
19
:
2021
-
2027
;
Published in Advance
September 10, 2009
,
doi:
10.1101/gr.089276.108
Abstract
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