Searching journal content for M. Thomas P. Gilbert in author.

Displaying results 1-10 of 14
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  1. Research: Ancient dog introgression into the Iberian wolf genome may have facilitated adaptation to human-dominated landscapes
    • Diana Lobo,
    • Hernán E. Morales,
    • Cock Van Oosterhout,
    • José Vicente López-Bao,
    • Pedro Silva,
    • Luis Llaneza,
    • Carolina Pacheco,
    • Diana Castro,
    • Germán Hernández-Alonso,
    • George Pacheco,
    • John Archer,
    • M. Thomas P. Gilbert,
    • Nuno Ferrand,
    • and Raquel Godinho
    Genome Res. March 2025 35: 432-445; Published in Advance February 14, 2025, doi:10.1101/gr.279093.124
    OPEN ACCESS ARTICLE
  2. Research: Replication timing networks reveal a link between transcription regulatory circuits and replication timing control
    • Juan Carlos Rivera-Mulia,
    • Sebo Kim,
    • Haitham Gabr,
    • Abhijit Chakraborty,
    • Ferhat Ay,
    • Tamer Kahveci,
    • and David M. Gilbert
    Genome Res. September 2019 29: 1415-1428; Published in Advance August 21, 2019, doi:10.1101/gr.247049.118
  3. Research: Allele-specific control of replication timing and genome organization during development
    • Juan Carlos Rivera-Mulia,
    • Andrew Dimond,
    • Daniel Vera,
    • Claudia Trevilla-Garcia,
    • Takayo Sasaki,
    • Jared Zimmerman,
    • Catherine Dupont,
    • Joost Gribnau,
    • Peter Fraser,
    • and David M. Gilbert
    Genome Res. June 2018 28: 800-811; Published in Advance May 7, 2018, doi:10.1101/gr.232561.117
  4. Research: Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program
    • Vishnu Dileep,
    • Ferhat Ay,
    • Jiao Sima,
    • Daniel L. Vera,
    • William S. Noble,
    • and David M. Gilbert
    Genome Res. August 2015 25: 1104-1113; Published in Advance May 20, 2015, doi:10.1101/gr.183699.114
  5. Research: Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells
    • Juan Carlos Rivera-Mulia,
    • Quinton Buckley,
    • Takayo Sasaki,
    • Jared Zimmerman,
    • Ruth A. Didier,
    • Kristopher Nazor,
    • Jeanne F. Loring,
    • Zheng Lian,
    • Sherman Weissman,
    • Allan J. Robins,
    • Thomas C. Schulz,
    • Laura Menendez,
    • Michael J. Kulik,
    • Stephen Dalton,
    • Haitham Gabr,
    • Tamer Kahveci,
    • and David M. Gilbert
    Genome Res. August 2015 25: 1091-1103; Published in Advance June 8, 2015, doi:10.1101/gr.187989.114
  6. Method: Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
    • Maxwell W. Libbrecht,
    • Ferhat Ay,
    • Michael M. Hoffman,
    • David M. Gilbert,
    • Jeffrey A. Bilmes,
    • and William Stafford Noble
    Genome Res. April 2015 25: 544-557; Published in Advance February 12, 2015, doi:10.1101/gr.184341.114
  7. Method: Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
    • Jakob Skou Pedersen,
    • Eivind Valen,
    • Amhed M. Vargas Velazquez,
    • Brian J. Parker,
    • Morten Rasmussen,
    • Stinus Lindgreen,
    • Berit Lilje,
    • Desmond J. Tobin,
    • Theresa K. Kelly,
    • Søren Vang,
    • Robin Andersson,
    • Peter A. Jones,
    • Cindi A. Hoover,
    • Alexei Tikhonov,
    • Egor Prokhortchouk,
    • Edward M. Rubin,
    • Albin Sandelin,
    • M. Thomas P. Gilbert,
    • Anders Krogh,
    • Eske Willerslev,
    • and Ludovic Orlando
    Genome Res. March 2014 24: 454-466; Published in Advance December 3, 2013, doi:10.1101/gr.163592.113
    OPEN ACCESS ARTICLE
  8. Research: Abnormal developmental control of replication-timing domains in pediatric acute lymphoblastic leukemia
    • Tyrone Ryba,
    • Dana Battaglia,
    • Bill H. Chang,
    • James W. Shirley,
    • Quinton Buckley,
    • Benjamin D. Pope,
    • Meenakshi Devidas,
    • Brian J. Druker,
    • and David M. Gilbert
    Genome Res. October 2012 22: 1833-1844; Published in Advance May 24, 2012, doi:10.1101/gr.138511.112
  9. Method: True single-molecule DNA sequencing of a pleistocene horse bone
    • Ludovic Orlando,
    • Aurelien Ginolhac,
    • Maanasa Raghavan,
    • Julia Vilstrup,
    • Morten Rasmussen,
    • Kim Magnussen,
    • Kathleen E. Steinmann,
    • Philipp Kapranov,
    • John F. Thompson,
    • Grant Zazula,
    • Duane Froese,
    • Ida Moltke,
    • Beth Shapiro,
    • Michael Hofreiter,
    • Khaled A.S. Al-Rasheid,
    • M. Thomas P. Gilbert,
    • and Eske Willerslev
    Genome Res. October 2011 21: 1705-1719; Published in Advance July 29, 2011, doi:10.1101/gr.122747.111
  10. Research: Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
    • Phillip A. Morin,
    • Frederick I. Archer,
    • Andrew D. Foote,
    • Julia Vilstrup,
    • Eric E. Allen,
    • Paul Wade,
    • John Durban,
    • Kim Parsons,
    • Robert Pitman,
    • Lewyn Li,
    • Pascal Bouffard,
    • Sandra C. Abel Nielsen,
    • Morten Rasmussen,
    • Eske Willerslev,
    • M. Thomas P. Gilbert,
    • and Timothy Harkins
    Genome Res. July 2010 20: 908-916; Published in Advance April 22, 2010, doi:10.1101/gr.102954.109
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