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M K Lee
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21
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Research
:
A prospective trial comparing programmable targeted long-read sequencing and short-read genome sequencing for genetic diagnosis of cerebellar ataxia
Haloom Rafehi
,
Liam G. Fearnley
,
Justin Read
,
Penny Snell
,
Kayli C. Davies
,
Liam Scott
,
Greta Gillies
,
Genevieve C. Thompson
,
Tess A. Field
,
Aleena Eldo
,
Simon Bodek
,
Ernest Butler
,
Luke Chen
,
John Drago
,
Himanshu Goel
,
Anna Hackett
,
G. Michael Halmagyi
,
Andrew Hannaford
,
Katya Kotschet
,
Kishore R. Kumar
,
Smitha Kumble
,
Matthew Lee-Archer
,
Abhishek Malhotra
,
Mark Paine
,
Michael Poon
,
Kate Pope
,
Katrina Reardon
,
Steven Ring
,
Anne Ronan
,
Matthew Silsby
,
Renee Smyth
,
Chloe Stutterd
,
Mathew Wallis
,
John Waterston
,
Thomas Wellings
,
Kirsty West
,
Christine Wools
,
Kathy H.C. Wu
,
David J. Szmulewicz
,
Martin B. Delatycki
,
Melanie Bahlo
,
and
Paul J. Lockhart
Genome Res.
April 2025
35
:
769
-
785
;
Published in Advance
February 27, 2025
,
doi:
10.1101/gr.279634.124
Abstract
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Research
:
Long-read DNA and cDNA sequencing identify cancer-predisposing deep intronic variation in tumor-suppressor genes
Suleyman Gulsuner
,
Amal AbuRayyan
,
Jessica B. Mandell
,
Ming K. Lee
,
Greta V. Bernier
,
Barbara M. Norquist
,
Sarah B. Pierce
,
Mary-Claire King
,
and
Tom Walsh
Genome Res.
November 2024
34
:
1825
-
1831
;
Published in Advance
September 13, 2024
,
doi:
10.1101/gr.279158.124
Abstract
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Method
:
Systematic mapping of TF-mediated cell fate changes by a pooled induction coupled with scRNA-seq and multi-omics approaches
Muyoung Lee
,
Qingqing Guo
,
Mijeong Kim
,
Joonhyuk Choi
,
Alia Segura
,
Alper Genceroglu
,
Lucy LeBlanc
,
Nereida Ramirez
,
Yu Jin Jang
,
Yeejin Jang
,
Bum-Kyu Lee
,
Edward M. Marcotte
,
and
Jonghwan Kim
Genome Res.
March 2024
34
:
484
-
497
;
Published in Advance
April 5, 2024
,
doi:
10.1101/gr.277926.123
Abstract
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Method
:
Mapping the regulatory landscape of auditory hair cells from single-cell multi-omics data
Shuze Wang
,
Mary P. Lee
,
Scott Jones
,
Jie Liu
,
and
Joerg Waldhaus
Genome Res.
October 2021
31
:
1885
-
1899
;
Published in Advance
April 9, 2021
,
doi:
10.1101/gr.271080.120
Abstract
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Research
:
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
Nicolae Sapoval
,
Medhat Mahmoud
,
Michael D. Jochum
,
Yunxi Liu
,
R.A. Leo Elworth
,
Qi Wang
,
Dreycey Albin
,
Huw A. Ogilvie
,
Michael D. Lee
,
Sonia Villapol
,
Kyle M. Hernandez
,
Irina Maljkovic Berry
,
Jonathan Foox
,
Afshin Beheshti
,
Krista Ternus
,
Kjersti M. Aagaard
,
David Posada
,
Christopher E. Mason
,
Fritz J. Sedlazeck
,
and
Todd J. Treangen
Genome Res.
April 2021
31
:
635
-
644
;
Published in Advance
February 18, 2021
,
doi:
10.1101/gr.268961.120
Abstract
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Research
:
LCM-seq reveals unique transcriptional adaptation mechanisms of resistant neurons and identifies protective pathways in spinal muscular atrophy
Susanne Nichterwitz
,
Jik Nijssen
,
Helena Storvall
,
Christoph Schweingruber
,
Laura Helen Comley
,
Ilary Allodi
,
Mirjam van der Lee
,
Qiaolin Deng
,
Rickard Sandberg
,
and
Eva Hedlund
Genome Res.
August 2020
30
:
1083
-
1096
;
Published in Advance
August 20, 2020
,
doi:
10.1101/gr.265017.120
Abstract
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Research
:
Genome wide analysis of 3′ UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish
Charles E. Vejnar
,
Mario Abdel Messih
,
Carter M. Takacs
,
Valeria Yartseva
,
Panos Oikonomou
,
Romain Christiano
,
Marlon Stoeckius
,
Stephanie Lau
,
Miler T. Lee
,
Jean-Denis Beaudoin
,
Damir Musaev
,
Hiba Darwich-Codore
,
Tobias C. Walther
,
Saeed Tavazoie
,
Daniel Cifuentes
,
and
Antonio J. Giraldez
Genome Res.
July 2019
29
:
1100
-
1114
;
Published in Advance
June 21, 2019
,
doi:
10.1101/gr.245159.118
Abstract
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Research
:
Transposable element insertions in fission yeast drive adaptation to environmental stress
Caroline Esnault
,
Michael Lee
,
Chloe Ham
,
and
Henry L. Levin
Genome Res.
January 2019
29
:
85
-
95
;
Published in Advance
December 12, 2018
,
doi:
10.1101/gr.239699.118
Abstract
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Research
:
Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of
ERAP2
transcripts under balancing selection
Chun Jimmie Ye
,
Jenny Chen
,
Alexandra-Chloé Villani
,
Rachel E. Gate
,
Meena Subramaniam
,
Tushar Bhangale
,
Mark N. Lee
,
Towfique Raj
,
Raktima Raychowdhury
,
Weibo Li
,
Noga Rogel
,
Sean Simmons
,
Selina H. Imboywa
,
Portia I. Chipendo
,
Cristin McCabe
,
Michelle H. Lee
,
Irene Y. Frohlich
,
Barbara E. Stranger
,
Philip L. De Jager
,
Aviv Regev
,
Tim Behrens
,
and
Nir Hacohen
Genome Res.
December 2018
28
:
1812
-
1825
;
Published in Advance
November 16, 2018
,
doi:
10.1101/gr.240390.118
Abstract
Full Text
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Method
:
Targeting mutant
KRAS
with CRISPR-Cas9 controls tumor growth
Wonjoo Kim
,
Sangeun Lee
,
Han Sang Kim
,
Minjung Song
,
Yong Hoon Cha
,
Young-Hoon Kim
,
Jeonghong Shin
,
Eun-Seo Lee
,
Yeonsoo Joo
,
Jae J. Song
,
Eun Ju Choi
,
Jae W. Choi
,
Jinu Lee
,
Moonkyung Kang
,
Jong In Yook
,
Min Goo Lee
,
Yeon-Soo Kim
,
Soonmyung Paik
,
and
Hyongbum (Henry) Kim
Genome Res.
March 2018
28
:
374
-
382
;
Published in Advance
January 11, 2018
,
doi:
10.1101/gr.223891.117
Abstract
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Single-cell gene signature scoring
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Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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