Searching journal content for Lior Pachter in author.

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  1. Research: Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity
    • Sachiko Takayama,
    • Joseph Dhahbi,
    • Adam Roberts,
    • Guanxiong Mao,
    • Seok-Jin Heo,
    • Lior Pachter,
    • David I.K. Martin,
    • and Dario Boffelli
    Genome Res. May 2014 24: 821-830; Published in Advance February 20, 2014, doi:10.1101/gr.162412.113
  2. Research: Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states
    • David I.K. Martin,
    • Meromit Singer,
    • Joseph Dhahbi,
    • Guanxiong Mao,
    • Lu Zhang,
    • Gary P. Schroth,
    • Lior Pachter,
    • and Dario Boffelli
    Genome Res. December 2011 21: 2049-2057; Published in Advance September 9, 2011, doi:10.1101/gr.122721.111
  3. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  4. Methods: Identification of transposable elements using multiple alignments of related genomes
    • Anat Caspi and
    • Lior Pachter
    Genome Res. February 2006 16: 260-270; Published in Advance December 14, 2005, doi:10.1101/gr.4361206
  5. LETTER: Intraspecies sequence comparisons for annotating genomes
    • Dario Boffelli,
    • Claire V. Weer,
    • Li Weng,
    • Keith D. Lewis,
    • Malak I. Shoukry,
    • Lior Pachter,
    • David N. Keys,
    • and Edward M. Rubin
    Genome Res. December 2004 14: 2406-2411; Published in Advance November 15, 2004, doi:10.1101/gr.3199704
  6. LETTER: Identification of Evolutionary Hotspots in the Rodent Genomes
    • Von Bing Yap and
    • Lior Pachter
    Genome Res. April 2004 14: 574-579; doi:10.1101/gr.1967904
  7. Methods: Accurate Identification of Novel Human Genes Through Simultaneous Gene Prediction in Human, Mouse, and Rat
    • Colin Dewey,
    • Jia Qian Wu,
    • Simon Cawley,
    • Marina Alexandersson,
    • Richard Gibbs,
    • and Lior Pachter
    Genome Res. April 2004 14: 661-664; doi:10.1101/gr.1939804
  8. Methods: MAVID: Constrained Ancestral Alignment of Multiple Sequences
    • Nicolas Bray and
    • Lior Pachter
    Genome Res. April 2004 14: 693-699; doi:10.1101/gr.1960404
  9. RESOURCE: Visualization of Multiple Genome Annotations and Alignments With the K-BROWSER
    • Kushal Chakrabarti and
    • Lior Pachter
    Genome Res. April 2004 14: 716-720; doi:10.1101/gr.1957004
  10. METHODS: SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model
    • Marina Alexandersson,
    • Simon Cawley,
    • and Lior Pachter
    Genome Res. March 1, 2003 13: 496-502; Published in Advance February 12, 2003, doi:10.1101/gr.424203
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