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Lior Pachter
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author
.
Displaying results 1-10 of
16
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Research
:
Genome methylation in
D. melanogaster
is found at specific short motifs and is independent of DNMT2 activity
Sachiko Takayama
,
Joseph Dhahbi
,
Adam Roberts
,
Guanxiong Mao
,
Seok-Jin Heo
,
Lior Pachter
,
David I.K. Martin
,
and
Dario Boffelli
Genome Res.
May 2014
24
:
821
-
830
;
Published in Advance
February 20, 2014
,
doi:
10.1101/gr.162412.113
Abstract
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Research
:
Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states
David I.K. Martin
,
Meromit Singer
,
Joseph Dhahbi
,
Guanxiong Mao
,
Lu Zhang
,
Gary P. Schroth
,
Lior Pachter
,
and
Dario Boffelli
Genome Res.
December 2011
21
:
2049
-
2057
;
Published in Advance
September 9, 2011
,
doi:
10.1101/gr.122721.111
Abstract
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ARTICLE
:
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Elliott H. Margulies
,
Gregory M. Cooper
,
George Asimenos
,
Daryl J. Thomas
,
Colin N. Dewey
,
Adam Siepel
,
Ewan Birney
,
Damian Keefe
,
Ariel S. Schwartz
,
Minmei Hou
,
James Taylor
,
Sergey Nikolaev
,
Juan I. Montoya-Burgos
,
Ari Löytynoja
,
Simon Whelan
,
Fabio Pardi
,
Tim Massingham
,
James B. Brown
,
Peter Bickel
,
Ian Holmes
,
James C. Mullikin
,
Abel Ureta-Vidal
,
Benedict Paten
,
Eric A. Stone
,
Kate R. Rosenbloom
,
W. James Kent
,
Gerard G. Bouffard
,
Xiaobin Guan
,
Nancy F. Hansen
,
Jacquelyn R. Idol
,
Valerie V.B. Maduro
,
Baishali Maskeri
,
Jennifer C. McDowell
,
Morgan Park
,
Pamela J. Thomas
,
Alice C. Young
,
Robert W. Blakesley
,
Donna M. Muzny
,
Erica Sodergren
,
David A. Wheeler
,
Kim C. Worley
,
Huaiyang Jiang
,
George M. Weinstock
,
Richard A. Gibbs
,
Tina Graves
,
Robert Fulton
,
Elaine R. Mardis
,
Richard K. Wilson
,
Michele Clamp
,
James Cuff
,
Sante Gnerre
,
David B. Jaffe
,
Jean L. Chang
,
Kerstin Lindblad-Toh
,
Eric S. Lander
,
Angie Hinrichs
,
Heather Trumbower
,
Hiram Clawson
,
Ann Zweig
,
Robert M. Kuhn
,
Galt Barber
,
Rachel Harte
,
Donna Karolchik
,
Matthew A. Field
,
Richard A. Moore
,
Carrie A. Matthewson
,
Jacqueline E. Schein
,
Marco A. Marra
,
Stylianos E. Antonarakis
,
Serafim Batzoglou
,
Nick Goldman
,
Ross Hardison
,
David Haussler
,
Webb Miller
,
Lior Pachter
,
Eric D. Green
,
and
Arend Sidow
Genome Res.
June 2007
17
:
760
-
774
;
doi:
10.1101/gr.6034307
Abstract
Full Text
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Methods
:
Identification of transposable elements using multiple alignments of related genomes
Anat Caspi
and
Lior Pachter
Genome Res.
February 2006
16
:
260
-
270
;
Published in Advance
December 14, 2005
,
doi:
10.1101/gr.4361206
Abstract
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LETTER
:
Intraspecies sequence comparisons for annotating genomes
Dario Boffelli
,
Claire V. Weer
,
Li Weng
,
Keith D. Lewis
,
Malak I. Shoukry
,
Lior Pachter
,
David N. Keys
,
and
Edward M. Rubin
Genome Res.
December 2004
14
:
2406
-
2411
;
Published in Advance
November 15, 2004
,
doi:
10.1101/gr.3199704
Abstract
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LETTER
:
Identification of Evolutionary Hotspots in the Rodent Genomes
Von Bing Yap
and
Lior Pachter
Genome Res.
April 2004
14
:
574
-
579
;
doi:
10.1101/gr.1967904
Abstract
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Methods
:
Accurate Identification of Novel Human Genes Through Simultaneous Gene Prediction in Human, Mouse, and Rat
Colin Dewey
,
Jia Qian Wu
,
Simon Cawley
,
Marina Alexandersson
,
Richard Gibbs
,
and
Lior Pachter
Genome Res.
April 2004
14
:
661
-
664
;
doi:
10.1101/gr.1939804
Abstract
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Methods
:
MAVID: Constrained Ancestral Alignment of Multiple Sequences
Nicolas Bray
and
Lior Pachter
Genome Res.
April 2004
14
:
693
-
699
;
doi:
10.1101/gr.1960404
Abstract
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RESOURCE
:
Visualization of Multiple Genome Annotations and Alignments With the K-BROWSER
Kushal Chakrabarti
and
Lior Pachter
Genome Res.
April 2004
14
:
716
-
720
;
doi:
10.1101/gr.1957004
Abstract
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METHODS
:
SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model
Marina Alexandersson
,
Simon Cawley
,
and
Lior Pachter
Genome Res.
March 1, 2003
13
:
496
-
502
;
Published in Advance
February 12, 2003
,
doi:
10.1101/gr.424203
Abstract
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