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L Wang
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33
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Method
:
Highly accurate assembly polishing with DeepPolisher
Mira Mastoras
,
Mobin Asri
,
Lucas Brambrink
,
Prajna Hebbar
,
Alexey Kolesnikov
,
Daniel E. Cook
,
Maria Nattestad
,
Julian Lucas
,
Taylor S. Won
,
Pi-Chuan Chang
,
Andrew Carroll
,
Benedict Paten
,
Kishwar Shafin
,
and
and the Human Pangenome Reference Consortium
Genome Res.
July 2025
35
:
1595
-
1608
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280149.124
Abstract
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Research
:
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
Liangxi Wang
,
Tiegh Taylor
,
Kumaragurubaran Rathnakumar
,
Nadiya Khyzha
,
Minggao Liang
,
Azad Alizada
,
Laura F. Campitelli
,
Sara E. Pour
,
Zain M. Patel
,
Lina Antounians
,
Ian C. Tobias
,
Huayun Hou
,
Timothy R. Hughes
,
Sushmita Roy
,
Jennifer A. Mitchell
,
Jason E. Fish
,
and
Michael D. Wilson
Genome Res.
July 2025
35
:
1544
-
1559
;
Published in Advance
June 6, 2025
,
doi:
10.1101/gr.280357.124
Abstract
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Method
:
A transcriptome-based single-cell biological age model and resource for tissue-specific aging measures
Shulin Mao
,
Jiayu Su
,
Longteng Wang
,
Xiaochen Bo
,
Cheng Li
,
and
Hebing Chen
Genome Res.
August 2023
33
:
1381
-
1394
;
Published in Advance
July 31, 2023
,
doi:
10.1101/gr.277491.122
Abstract
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Research
:
Kinetic networks identify TWIST2 as a key regulatory node in adipogenesis
Arun B. Dutta
,
Daniel S. Lank
,
Roza K. Przanowska
,
Piotr Przanowski
,
Lixin Wang
,
Bao Nguyen
,
Ninad M. Walavalkar
,
Fabiana M. Duarte
,
and
Michael J. Guertin
Genome Res.
March 2023
33
:
314
-
331
;
Published in Advance
February 21, 2023
,
doi:
10.1101/gr.277559.122
Abstract
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Research
:
Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
Xin Li
,
San-Gang He
,
Wen-Rong Li
,
Ling-Yun Luo
,
Ze Yan
,
Dong-Xin Mo
,
Xing Wan
,
Feng-Hua Lv
,
Ji Yang
,
Ya-Xi Xu
,
Juan Deng
,
Qiang-Hui Zhu
,
Xing-Long Xie
,
Song-Song Xu
,
Chen-Xi Liu
,
Xin-Rong Peng
,
Bin Han
,
Zhong-Hui Li
,
Lei Chen
,
Jian-Lin Han
,
Xue-Zhi Ding
,
Renqing Dingkao
,
Yue-Feng Chu
,
Jin-Yan Wu
,
Li-Min Wang
,
Ping Zhou
,
Ming-Jun Liu
,
and
Meng-Hua Li
Genome Res.
September 2022
32
:
1669
-
1684
;
Published in Advance
August 10, 2022
,
doi:
10.1101/gr.276769.122
Abstract
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Resource
:
dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development
Xin Huang
,
Xiaohan Tang
,
Xuemei Bai
,
Honglei Li
,
Huan Tao
,
Junting Wang
,
Yaru Li
,
Yu Sun
,
Yang Zheng
,
Xiang Xu
,
Longteng Wang
,
Yang Ding
,
Meisong Lu
,
Pingkun Zhou
,
Xiaochen Bo
,
Hao Li
,
and
Hebing Chen
Genome Res.
August 2022
32
:
1612
-
1625
;
Published in Advance
August 17, 2022
,
doi:
10.1101/gr.276744.122
Abstract
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Corrigendum
:
Corrigendum: An association test of the spatial distribution of rare missense variants within protein structures identifies Alzheimer's disease–related patterns
Bowen Jin
,
John A. Capra
,
Penelope Benchek
,
Nicholas Wheeler
,
Adam C. Naj
,
Kara L. Hamilton-Nelson
,
John J. Farrell
,
Yuk Yee Leung
,
Brian Kunkle
,
Badri Vadarajan
,
Gerard D. Schellenberg
,
Richard Mayeux
,
Li-San Wang
,
Lindsay A. Farrer
,
Margaret A. Pericak-Vance
,
Eden R. Martin
,
Jonathan L. Haines
,
Dana C. Crawford
,
and
William S. Bush
Genome Res.
June 2022
32
:
1228_1
;
doi:
10.1101/gr.276900.122
Extract
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Method
:
An association test of the spatial distribution of rare missense variants within protein structures identifies Alzheimer's disease–related patterns
Bowen Jin
,
John A. Capra
,
Penelope Benchek
,
Nicholas Wheeler
,
Adam C. Naj
,
Kara L. Hamilton-Nelson
,
John J. Farrell
,
Yuk Yee Leung
,
Brian Kunkle
,
Badri Vadarajan
,
Gerard D. Schellenberg
,
Richard Mayeux
,
Li-San Wang
,
Lindsay A. Farrer
,
Margaret A. Pericak-Vance
,
Eden R. Martin
,
Jonathan L. Haines
,
Dana C. Crawford
,
and
William S. Bush
Genome Res.
April 2022
32
:
778
-
790
;
Published in Advance
February 24, 2022
,
doi:
10.1101/gr.276069.121
Abstract
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Research
:
Tissue-specific reprogramming of host tRNA transcriptome by the microbiome
Jia Huang
,
Wenjun Chen
,
Fan Zhou
,
Zhichang Pang
,
Luoluo Wang
,
Tao Pan
,
and
Xiaoyun Wang
Genome Res.
June 2021
31
:
947
-
957
;
Published in Advance
April 15, 2021
,
doi:
10.1101/gr.272153.120
Abstract
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Method
:
Alignment of single-cell RNA-seq samples without overcorrection using kernel density matching
Mengjie Chen
,
Qi Zhan
,
Zepeng Mu
,
Lili Wang
,
Zhaohui Zheng
,
Jinlin Miao
,
Ping Zhu
,
and
Yang I. Li
Genome Res.
April 2021
31
:
698
-
712
;
Published in Advance
March 19, 2021
,
doi:
10.1101/gr.261115.120
Abstract
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