Searching journal content for L Chen in author.

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  1. Research: A prospective trial comparing programmable targeted long-read sequencing and short-read genome sequencing for genetic diagnosis of cerebellar ataxia
    • Haloom Rafehi,
    • Liam G. Fearnley,
    • Justin Read,
    • Penny Snell,
    • Kayli C. Davies,
    • Liam Scott,
    • Greta Gillies,
    • Genevieve C. Thompson,
    • Tess A. Field,
    • Aleena Eldo,
    • Simon Bodek,
    • Ernest Butler,
    • Luke Chen,
    • John Drago,
    • Himanshu Goel,
    • Anna Hackett,
    • G. Michael Halmagyi,
    • Andrew Hannaford,
    • Katya Kotschet,
    • Kishore R. Kumar,
    • Smitha Kumble,
    • Matthew Lee-Archer,
    • Abhishek Malhotra,
    • Mark Paine,
    • Michael Poon,
    • Kate Pope,
    • Katrina Reardon,
    • Steven Ring,
    • Anne Ronan,
    • Matthew Silsby,
    • Renee Smyth,
    • Chloe Stutterd,
    • Mathew Wallis,
    • John Waterston,
    • Thomas Wellings,
    • Kirsty West,
    • Christine Wools,
    • Kathy H.C. Wu,
    • David J. Szmulewicz,
    • Martin B. Delatycki,
    • Melanie Bahlo,
    • and Paul J. Lockhart
    Genome Res. April 2025 35: 769-785; Published in Advance February 27, 2025, doi:10.1101/gr.279634.124
  2. Method: Nanopore-based consensus sequencing enables accurate multimodal tumor cell-free DNA profiling
    • Li-Ting Chen,
    • Myrthe Jager,
    • Dàmi Rebergen,
    • Geertruid J. Brink,
    • Tom van den Ende,
    • Willem Vanderlinden,
    • Pauline Kolbeck,
    • Marc Pagès-Gallego,
    • Ymke van der Pol,
    • Nicolle Besselink,
    • Norbert Moldovan,
    • Nizar Hami,
    • Wigard P. Kloosterman,
    • Hanneke van Laarhoven,
    • Florent Mouliere,
    • Ronald Zweemer,
    • Jan Lipfert,
    • Sarah Derks,
    • Alessio Marcozzi,
    • and Jeroen de Ridder
    Genome Res. April 2025 35: 886-899; Published in Advance January 13, 2025, doi:10.1101/gr.279144.124
    OPEN ACCESS ARTICLE
  3. Research: Chromatin interaction maps identify oncogenic targets of enhancer duplications in cancer
    • Yueqiang Song,
    • Fuyuan Li,
    • Shangzi Wang,
    • Yuntong Wang,
    • Cong Lai,
    • Lian Chen,
    • Ning Jiang,
    • Jin Li,
    • Xingdong Chen,
    • Swneke D. Bailey,
    • and Xiaoyang Zhang
    Genome Res. October 2024 34: 1514-1527; Published in Advance October 18, 2024, doi:10.1101/gr.278418.123
  4. Research: Single-cell spatial transcriptomics reveals a dystrophic trajectory following a developmental bifurcation of myoblast cell fates in facioscapulohumeral muscular dystrophy
    • Lujia Chen,
    • Xiangduo Kong,
    • Kevin G. Johnston,
    • Ali Mortazavi,
    • Todd C. Holmes,
    • Zhiqun Tan,
    • Kyoko Yokomori,
    • and Xiangmin Xu
    Genome Res. May 2024 34: 665-679; Published in Advance May 22, 2024, doi:10.1101/gr.278717.123
    OPEN ACCESS ARTICLE
  5. Research: Systematic identification and characterization of exon–intron circRNAs
    • Yinchun Zhong,
    • Yan Yang,
    • Xiaolin Wang,
    • Bingbing Ren,
    • Xueren Wang,
    • Ge Shan,
    • and Liang Chen
    Genome Res. March 2024 34: 376-393; Published in Advance April 12, 2024, doi:10.1101/gr.278590.123
    OPEN ACCESS ARTICLE
  6. Resource: Haplotype-resolved 3D chromatin architecture of the hybrid pig
    • Yu Lin,
    • Jing Li,
    • Yiren Gu,
    • Long Jin,
    • Jingyi Bai,
    • Jiaman Zhang,
    • Yujie Wang,
    • Pengliang Liu,
    • Keren Long,
    • Mengnan He,
    • Diyan Li,
    • Can Liu,
    • Ziyin Han,
    • Yu Zhang,
    • Xiaokai Li,
    • Bo Zeng,
    • Lu Lu,
    • Fanli Kong,
    • Ying Sun,
    • Yongliang Fan,
    • Xun Wang,
    • Tao Wang,
    • An'an Jiang,
    • Jideng Ma,
    • Linyuan Shen,
    • Li Zhu,
    • Yanzhi Jiang,
    • Guoqing Tang,
    • Xiaolan Fan,
    • Qingyou Liu,
    • Hua Li,
    • Jinyong Wang,
    • Li Chen,
    • Liangpeng Ge,
    • Xuewei Li,
    • Qianzi Tang,
    • and Mingzhou Li
    Genome Res. February 2024 34: 310-325; Published in Advance March 13, 2024, doi:10.1101/gr.278101.123
    OPEN ACCESS ARTICLE
  7. Method: Allele-specific RNA N6-methyladenosine modifications reveal functional genetic variants in human tissues
    • Shuo Cao,
    • Haoran Zhu,
    • Jinru Cui,
    • Sun Liu,
    • Yuhe Li,
    • Junfang Shi,
    • Junyuan Mo,
    • Zihan Wang,
    • Hailan Wang,
    • Jiaxin Hu,
    • Lizhi Chen,
    • Yuan Li,
    • Laixin Xia,
    • and Shan Xiao
    Genome Res. August 2023 33: 1369-1380; Published in Advance September 15, 2023, doi:10.1101/gr.277704.123
  8. Method: Simultaneous profiling of host expression and microbial abundance by spatial metatranscriptome sequencing
    • Lin Lyu,
    • Xue Li,
    • Ru Feng,
    • Xin Zhou,
    • Tuhin K. Guha,
    • Xiaofei Yu,
    • Guo Qiang Chen,
    • Yufeng Yao,
    • Bing Su,
    • Duowu Zou,
    • Michael P. Snyder,
    • and Lei Chen
    Genome Res. March 2023 33: 401-411; Published in Advance March 27, 2023, doi:10.1101/gr.277178.122
  9. Research: Genomic analyses of wild argali, domestic sheep, and their hybrids provide insights into chromosome evolution, phenotypic variation, and germplasm innovation
    • Xin Li,
    • San-Gang He,
    • Wen-Rong Li,
    • Ling-Yun Luo,
    • Ze Yan,
    • Dong-Xin Mo,
    • Xing Wan,
    • Feng-Hua Lv,
    • Ji Yang,
    • Ya-Xi Xu,
    • Juan Deng,
    • Qiang-Hui Zhu,
    • Xing-Long Xie,
    • Song-Song Xu,
    • Chen-Xi Liu,
    • Xin-Rong Peng,
    • Bin Han,
    • Zhong-Hui Li,
    • Lei Chen,
    • Jian-Lin Han,
    • Xue-Zhi Ding,
    • Renqing Dingkao,
    • Yue-Feng Chu,
    • Jin-Yan Wu,
    • Li-Min Wang,
    • Ping Zhou,
    • Ming-Jun Liu,
    • and Meng-Hua Li
    Genome Res. September 2022 32: 1669-1684; Published in Advance August 10, 2022, doi:10.1101/gr.276769.122
    OPEN ACCESS ARTICLE
  10. Review: Accurate and complete genomes from metagenomes
    • Lin-Xing Chen,
    • Karthik Anantharaman,
    • Alon Shaiber,
    • A. Murat Eren,
    • and Jillian F. Banfield
    Genome Res. March 2020 30: 315-333; Published in Advance March 18, 2020, doi:10.1101/gr.258640.119
    OPEN ACCESS ARTICLE
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