Searching journal content for Kevin P. White in author.

Displaying results 1-10 of 11
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  1. Resource: A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq
    • Sophia C. Gaynor-Gillett,
    • Lijun Cheng,
    • Manman Shi,
    • Jason Liu,
    • Gaoyuan Wang,
    • Megan Spector,
    • Qiuyu Guo,
    • Le Qi,
    • Mary Flaherty,
    • Martha Wall,
    • Ahyeon Hwang,
    • Mengting Gu,
    • Zhanlin Chen,
    • Yuhang Chen,
    • PsychENCODE Consortium,
    • Jennifer R. Moran,
    • Jing Zhang,
    • Donghoon Lee,
    • Mark Gerstein,
    • Daniel Geschwind,
    • and Kevin P. White
    Genome Res. August 2025 35: 1887-1901; Published in Advance July 11, 2025, doi:10.1101/gr.279584.124
  2. Resource: Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships
    • Michelle Kudron,
    • Louis Gevirtzman,
    • Alec Victorsen,
    • Bridget C. Lear,
    • Jiahao Gao,
    • Jinrui Xu,
    • Swapna Samanta,
    • Emily Frink,
    • Adri Tran-Pearson,
    • Chau Huynh,
    • Dionne Vafeados,
    • Ann Hammonds,
    • William Fisher,
    • Martha Wall,
    • Greg Wesseling,
    • Vanessa Hernandez,
    • Zhichun Lin,
    • Mary Kasparian,
    • Kevin White,
    • Ravi Allada,
    • Mark Gerstein,
    • LaDeana Hillier,
    • Susan E. Celniker,
    • Valerie Reinke,
    • and Robert H. Waterston
    Genome Res. December 2024 34: 2319-2334; Published in Advance October 22, 2024, doi:10.1101/gr.279037.124
  3. Research: Evolution of transcript modification by N6-methyladenosine in primates
    • Lijia Ma,
    • Boxuan Zhao,
    • Kai Chen,
    • Amber Thomas,
    • Jigyasa H. Tuteja,
    • Xin He,
    • Chuan He,
    • and Kevin P. White
    Genome Res. March 2017 27: 385-392; Published in Advance January 4, 2017, doi:10.1101/gr.212563.116
  4. Resource: Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster
    • Matthew Slattery,
    • Lijia Ma,
    • Rebecca F. Spokony,
    • Robert K. Arthur,
    • Pouya Kheradpour,
    • Anshul Kundaje,
    • Nicolas Nègre,
    • Alex Crofts,
    • Ryan Ptashkin,
    • Jennifer Zieba,
    • Alexander Ostapenko,
    • Sarah Suchy,
    • Alec Victorsen,
    • Nader Jameel,
    • A. Jason Grundstad,
    • Wenxuan Gao,
    • Jennifer R. Moran,
    • E. Jay Rehm,
    • Robert L. Grossman,
    • Manolis Kellis,
    • and Kevin P. White
    Genome Res. July 2014 24: 1224-1235; Published in Advance July 1, 2014, doi:10.1101/gr.168807.113
    OPEN ACCESS ARTICLE
  5. Research: Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification
    • Robert K. Arthur,
    • Lijia Ma,
    • Matthew Slattery,
    • Rebecca F. Spokony,
    • Alexander Ostapenko,
    • Nicolas Nègre,
    • and Kevin P. White
    Genome Res. July 2014 24: 1115-1124; Published in Advance July 1, 2014, doi:10.1101/gr.162008.113
    OPEN ACCESS ARTICLE
  6. Research: Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells
    • Timothy J. Looney,
    • Li Zhang,
    • Chih-Hsin Chen,
    • Jae Hyun Lee,
    • Sheila Chari,
    • Frank Fuxiang Mao,
    • Mattia Pelizzola,
    • Lu Zhang,
    • Ryan Lister,
    • Samuel W. Baker,
    • Croydon J. Fernandes,
    • Jedidiah Gaetz,
    • Kara M. Foshay,
    • Kayla L. Clift,
    • Zhenyu Zhang,
    • Wei-Qiang Li,
    • Eric J. Vallender,
    • Ulrich Wagner,
    • Jane Yuxia Qin,
    • Katelyn J. Michelini,
    • Branimir Bugarija,
    • Donghyun Park,
    • Emmanuel Aryee,
    • Thomas Stricker,
    • Jie Zhou,
    • Kevin P. White,
    • Bing Ren,
    • Gary P. Schroth,
    • Joseph R. Ecker,
    • Andy Peng Xiang,
    • and Bruce T. Lahn
    Genome Res. February 2014 24: 267-280; Published in Advance December 5, 2013, doi:10.1101/gr.143891.112
  7. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  8. Research: Evidence of abundant stop codon readthrough in Drosophila and other metazoa
    • Irwin Jungreis,
    • Michael F. Lin,
    • Rebecca Spokony,
    • Clara S. Chan,
    • Nicolas Negre,
    • Alec Victorsen,
    • Kevin P. White,
    • and Manolis Kellis
    Genome Res. December 2011 21: 2096-2113; Published in Advance October 12, 2011, doi:10.1101/gr.119974.110
    OPEN ACCESS ARTICLE
  9. Letter: Genomic mapping of binding regions for the Ecdysone receptor protein complex
    • Zareen Gauhar,
    • Ling V. Sun,
    • Sujun Hua,
    • Christopher E. Mason,
    • Florian Fuchs,
    • Tong-Ruei Li,
    • Michael Boutros,
    • and Kevin P. White
    Genome Res. June 2009 19: 1006-1013; Published in Advance February 23, 2009, doi:10.1101/gr.081349.108
  10. LETTER: Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles
    • Yoav Gilad,
    • Scott A. Rifkin,
    • Paul Bertone,
    • Mark Gerstein,
    • and Kevin P. White
    Genome Res. May 2005 15: 674-680; doi:10.1101/gr.3335705
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