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Kerstin Howe
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:
Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding
Kai Li
,
Melissa L. Smith
,
J. Chris Blazier
,
Kelli J. Kochan
,
Jonathan M.D. Wood
,
Kerstin Howe
,
Anne E. Kwitek
,
Melinda R. Dwinell
,
Hao Chen
,
Julia L. Ciosek
,
Patrick Masterson
,
Terence D. Murphy
,
Theodore S. Kalbfleisch
,
and
Peter A. Doris
Genome Res.
November 2024
34
:
2081
-
2093
;
Published in Advance
November 8, 2024
,
doi:
10.1101/gr.279292.124
Abstract
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:
Gaps and complex structurally variant loci in phased genome assemblies
David Porubsky
,
Mitchell R. Vollger
,
William T. Harvey
,
Allison N. Rozanski
,
Peter Ebert
,
Glenn Hickey
,
Patrick Hasenfeld
,
Ashley D. Sanders
,
Catherine Stober
,
Human Pangenome Reference Consortium
,
Jan O. Korbel
,
Benedict Paten
,
Tobias Marschall
,
and
Evan E. Eichler
Genome Res.
April 2023
33
:
496
-
510
;
Published in Advance
May 10, 2023
,
doi:
10.1101/gr.277334.122
Abstract
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Research
:
Repeat associated mechanisms of genome evolution and function revealed by the
Mus caroli
and
Mus pahari
genomes
David Thybert
,
Maša Roller
,
Fábio C.P. Navarro
,
Ian Fiddes
,
Ian Streeter
,
Christine Feig
,
David Martin-Galvez
,
Mikhail Kolmogorov
,
Václav Janoušek
,
Wasiu Akanni
,
Bronwen Aken
,
Sarah Aldridge
,
Varshith Chakrapani
,
William Chow
,
Laura Clarke
,
Carla Cummins
,
Anthony Doran
,
Matthew Dunn
,
Leo Goodstadt
,
Kerstin Howe
,
Matthew Howell
,
Ambre-Aurore Josselin
,
Robert C. Karn
,
Christina M. Laukaitis
,
Lilue Jingtao
,
Fergal Martin
,
Matthieu Muffato
,
Stefanie Nachtweide
,
Michael A. Quail
,
Cristina Sisu
,
Mario Stanke
,
Klara Stefflova
,
Cock Van Oosterhout
,
Frederic Veyrunes
,
Ben Ward
,
Fengtang Yang
,
Golbahar Yazdanifar
,
Amonida Zadissa
,
David J. Adams
,
Alvis Brazma
,
Mark Gerstein
,
Benedict Paten
,
Son Pham
,
Thomas M. Keane
,
Duncan T. Odom
,
and
Paul Flicek
Genome Res.
April 2018
28
:
448
-
459
;
Published in Advance
March 21, 2018
,
doi:
10.1101/gr.234096.117
Abstract
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Resource
:
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider
,
Tina Graves-Lindsay
,
Kerstin Howe
,
Nathan Bouk
,
Hsiu-Chuan Chen
,
Paul A. Kitts
,
Terence D. Murphy
,
Kim D. Pruitt
,
Françoise Thibaud-Nissen
,
Derek Albracht
,
Robert S. Fulton
,
Milinn Kremitzki
,
Vincent Magrini
,
Chris Markovic
,
Sean McGrath
,
Karyn Meltz Steinberg
,
Kate Auger
,
William Chow
,
Joanna Collins
,
Glenn Harden
,
Timothy Hubbard
,
Sarah Pelan
,
Jared T. Simpson
,
Glen Threadgold
,
James Torrance
,
Jonathan M. Wood
,
Laura Clarke
,
Sergey Koren
,
Matthew Boitano
,
Paul Peluso
,
Heng Li
,
Chen-Shan Chin
,
Adam M. Phillippy
,
Richard Durbin
,
Richard K. Wilson
,
Paul Flicek
,
Evan E. Eichler
,
and
Deanna M. Church
Genome Res.
May 2017
27
:
849
-
864
;
Published in Advance
April 10, 2017
,
doi:
10.1101/gr.213611.116
Abstract
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Resource
:
The pig X and Y Chromosomes: structure, sequence, and evolution
Benjamin M. Skinner
,
Carole A. Sargent
,
Carol Churcher
,
Toby Hunt
,
Javier Herrero
,
Jane E. Loveland
,
Matt Dunn
,
Sandra Louzada
,
Beiyuan Fu
,
William Chow
,
James Gilbert
,
Siobhan Austin-Guest
,
Kathryn Beal
,
Denise Carvalho-Silva
,
William Cheng
,
Daria Gordon
,
Darren Grafham
,
Matt Hardy
,
Jo Harley
,
Heidi Hauser
,
Philip Howden
,
Kerstin Howe
,
Kim Lachani
,
Peter J.I. Ellis
,
Daniel Kelly
,
Giselle Kerry
,
James Kerwin
,
Bee Ling Ng
,
Glen Threadgold
,
Thomas Wileman
,
Jonathan M.D. Wood
,
Fengtang Yang
,
Jen Harrow
,
Nabeel A. Affara
,
and
Chris Tyler-Smith
Genome Res.
January 2016
26
:
130
-
139
;
Published in Advance
November 11, 2015
,
doi:
10.1101/gr.188839.114
Abstract
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ARTICLE
:
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates
Hiroshi Kikuta
,
Mary Laplante
,
Pavla Navratilova
,
Anna Z. Komisarczuk
,
Pär G. Engström
,
David Fredman
,
Altuna Akalin
,
Mario Caccamo
,
Ian Sealy
,
Kerstin Howe
,
Julien Ghislain
,
Guillaume Pezeron
,
Philippe Mourrain
,
Staale Ellingsen
,
Andrew C. Oates
,
Christine Thisse
,
Bernard Thisse
,
Isabelle Foucher
,
Birgit Adolf
,
Andrea Geling
,
Boris Lenhard
,
and
Thomas S. Becker
Genome Res.
May 2007
17
:
545
-
555
;
Published in Advance
March 26, 2007
,
doi:
10.1101/gr.6086307
Abstract
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