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Katherine S. Pollard
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10
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Method
:
The oligogenic inheritance test GCOD detects risk genes and their interactions in congenital heart defects
Maureen Pittman
,
Kihyun Lee
,
Franco Felix
,
Yu Huang
,
Adrienne Lam
,
Mauro W. Costa
,
Deepak Srivastava
,
and
Katherine S. Pollard
Genome Res.
February 2026
36
:
330
-
347
;
Published in Advance
December 12, 2025
,
doi:
10.1101/gr.281141.125
Abstract
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Research
:
Contiguous and complete assemblies of
Blastocystis
gut microbiome–associated protists reveal evolutionary diversification to host ecology
Abigail L. Lind
,
Nathan A. McDonald
,
Elias R. Gerrick
,
Ami S. Bhatt
,
and
Katherine S. Pollard
Genome Res.
June 2025
35
:
1377
-
1390
;
Published in Advance
April 22, 2025
,
doi:
10.1101/gr.279080.124
Abstract
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Method
:
Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC
Byron J. Smith
,
Chunyu Zhao
,
Veronika Dubinkina
,
Xiaofan Jin
,
Liron Zahavi
,
Saar Shoer
,
Jacqueline Moltzau-Anderson
,
Eran Segal
,
and
Katherine S. Pollard
Genome Res.
May 2025
35
:
1247
-
1260
;
Published in Advance
April 10, 2025
,
doi:
10.1101/gr.279543.124
Abstract
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Research
:
Genome-wide variability in recombination activity is associated with meiotic chromatin organization
Xiaofan Jin
,
Geoff Fudenberg
,
and
Katherine S. Pollard
Genome Res.
September 2021
31
:
1561
-
1572
;
Published in Advance
July 23, 2021
,
doi:
10.1101/gr.275358.121
Abstract
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Research
:
Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment
Morteza Roodgar
,
Benjamin H. Good
,
Nandita R. Garud
,
Stephen Martis
,
Mohan Avula
,
Wenyu Zhou
,
Samuel M. Lancaster
,
Hayan Lee
,
Afshin Babveyh
,
Sophia Nesamoney
,
Katherine S. Pollard
,
and
Michael P. Snyder
Genome Res.
August 2021
31
:
1433
-
1446
;
Published in Advance
July 22, 2021
,
doi:
10.1101/gr.265058.120
Abstract
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Research
:
Most chromatin interactions are not in linkage disequilibrium
Sean Whalen
and
Katherine S. Pollard
Genome Res.
March 2019
29
:
334
-
343
;
Published in Advance
January 7, 2019
,
doi:
10.1101/gr.238022.118
Abstract
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Method
:
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Stephen Nayfach
,
Beltran Rodriguez-Mueller
,
Nandita Garud
,
and
Katherine S. Pollard
Genome Res.
November 2016
26
:
1612
-
1625
;
Published in Advance
October 18, 2016
,
doi:
10.1101/gr.201863.115
Abstract
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Methods
:
Detection of nonneutral substitution rates on mammalian phylogenies
Katherine S. Pollard
,
Melissa J. Hubisz
,
Kate R. Rosenbloom
,
and
Adam Siepel
Genome Res.
January 2010
20
:
110
-
121
;
Published in Advance
October 26, 2009
,
doi:
10.1101/gr.097857.109
Abstract
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LETTER
:
Accelerated sequence divergence of conserved genomic elements in
Drosophila melanogaster
Alisha K. Holloway
,
David J. Begun
,
Adam Siepel
,
and
Katherine S. Pollard
Genome Res.
October 2008
18
:
1592
-
1601
;
Published in Advance
June 26, 2008
,
doi:
10.1101/gr.077131.108
Abstract
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LETTER
:
Biased clustered substitutions in the human genome: The footprints of male-driven biased gene conversion
Timothy R. Dreszer
,
Gregory D. Wall
,
David Haussler
,
and
Katherine S. Pollard
Genome Res.
October 2007
17
:
1420
-
1430
;
Published in Advance
September 4, 2007
,
doi:
10.1101/gr.6395807
Abstract
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March 2026, 36 (3)
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Single-cell gene signature scoring
Chromosome engineering in 8p syndrome
Convergent evolution in arid rodents
Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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