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Kateryna D. Makova
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18
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Method
:
Highly accurate assembly polishing with DeepPolisher
Mira Mastoras
,
Mobin Asri
,
Lucas Brambrink
,
Prajna Hebbar
,
Alexey Kolesnikov
,
Daniel E. Cook
,
Maria Nattestad
,
Julian Lucas
,
Taylor S. Won
,
Pi-Chuan Chang
,
Andrew Carroll
,
Benedict Paten
,
Kishwar Shafin
,
and
and the Human Pangenome Reference Consortium
Genome Res.
July 2025
35
:
1595
-
1608
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280149.124
Abstract
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Method
:
Accurate sequencing of DNA motifs able to form alternative (non-B) structures
Matthias H. Weissensteiner
,
Marzia A. Cremona
,
Wilfried M. Guiblet
,
Nicholas Stoler
,
Robert S. Harris
,
Monika Cechova
,
Kristin A. Eckert
,
Francesca Chiaromonte
,
Yi-Fei Huang
,
and
Kateryna D. Makova
Genome Res.
July 11, 2023
;
Published in Advance
July 11, 2023
,
doi:
10.1101/gr.277490.122
Abstract
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In memoriam
:
C. Thomas Caskey (1938–2022)
Richard A. Gibbs
,
Aravinda Chakravarti
,
Evan E. Eichler
,
Eric D. Green
,
Richard M. Myers
,
Anne C. Ferguson-Smith
,
Kateryna D. Makova
,
and
Hillary E. Sussman
Genome Res.
March 2022
32
:
vii
-
viii
;
Published in Advance
February 17, 2022
,
doi:
10.1101/gr.276658.122
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Research
:
Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
Wilfried M. Guiblet
,
Michael DeGiorgio
,
Xiaoheng Cheng
,
Francesca Chiaromonte
,
Kristin A. Eckert
,
Yi-Fei Huang
,
and
Kateryna D. Makova
Genome Res.
July 2021
31
:
1136
-
1149
;
Published in Advance
June 29, 2021
,
doi:
10.1101/gr.269589.120
Abstract
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Research
:
Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
Wilfried M. Guiblet
,
Marzia A. Cremona
,
Monika Cechova
,
Robert S. Harris
,
Iva Kejnovská
,
Eduard Kejnovsky
,
Kristin Eckert
,
Francesca Chiaromonte
,
and
Kateryna D. Makova
Genome Res.
December 2018
28
:
1767
-
1778
;
Published in Advance
November 6, 2018
,
doi:
10.1101/gr.241257.118
Abstract
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Corrigendum
:
Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
Arkarachai Fungtammasan
,
Erin Walsh
,
Francesca Chiaromonte
,
Kristin A. Eckert
,
and
Kateryna D. Makova
Genome Res.
October 2016
26
:
1451
;
doi:
10.1101/gr.214460.116
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Method
:
A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
Marta Tomaszkiewicz
,
Samarth Rangavittal
,
Monika Cechova
,
Rebeca Campos Sanchez
,
Howard W. Fescemyer
,
Robert Harris
,
Danling Ye
,
Patricia C.M. O'Brien
,
Rayan Chikhi
,
Oliver A. Ryder
,
Malcolm A. Ferguson-Smith
,
Paul Medvedev
,
and
Kateryna D. Makova
Genome Res.
April 2016
26
:
530
-
540
;
Published in Advance
March 2, 2016
,
doi:
10.1101/gr.199448.115
Abstract
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Method
:
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
Arkarachai Fungtammasan
,
Guruprasad Ananda
,
Suzanne E. Hile
,
Marcia Shu-Wei Su
,
Chen Sun
,
Robert Harris
,
Paul Medvedev
,
Kristin Eckert
,
and
Kateryna D. Makova
Genome Res.
May 2015
25
:
736
-
749
;
Published in Advance
March 30, 2015
,
doi:
10.1101/gr.185892.114
Abstract
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Research
:
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
Stephen B. Montgomery
,
David L. Goode
,
Erika Kvikstad
,
Cornelis A. Albers
,
Zhengdong D. Zhang
,
Xinmeng Jasmine Mu
,
Guruprasad Ananda
,
Bryan Howie
,
Konrad J. Karczewski
,
Kevin S. Smith
,
Vanessa Anaya
,
Rhea Richardson
,
Joe Davis
,
The 1000 Genomes Project Consortium
,
Daniel G. MacArthur
,
Arend Sidow
,
Laurent Duret
,
Mark Gerstein
,
Kateryna D. Makova
,
Jonathan Marchini
,
Gil McVean
,
and
Gerton Lunter
Genome Res.
May 2013
23
:
749
-
761
;
Published in Advance
March 11, 2013
,
doi:
10.1101/gr.148718.112
Abstract
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Research
:
A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
Arkarachai Fungtammasan
,
Erin Walsh
,
Francesca Chiaromonte
,
Kristin A. Eckert
,
and
Kateryna D. Makova
Genome Res.
June 2012
22
:
993
-
1005
;
Published in Advance
March 28, 2012
,
doi:
10.1101/gr.134395.111
Abstract
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