Searching journal content for Kateryna D. Makova in author.

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  1. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  2. Method: Accurate sequencing of DNA motifs able to form alternative (non-B) structures
    • Matthias H. Weissensteiner,
    • Marzia A. Cremona,
    • Wilfried M. Guiblet,
    • Nicholas Stoler,
    • Robert S. Harris,
    • Monika Cechova,
    • Kristin A. Eckert,
    • Francesca Chiaromonte,
    • Yi-Fei Huang,
    • and Kateryna D. Makova
    Genome Res. July 11, 2023 ; Published in Advance July 11, 2023, doi:10.1101/gr.277490.122
    OPEN ACCESS ARTICLE
  3. In memoriam: C. Thomas Caskey (1938–2022)
    • Richard A. Gibbs,
    • Aravinda Chakravarti,
    • Evan E. Eichler,
    • Eric D. Green,
    • Richard M. Myers,
    • Anne C. Ferguson-Smith,
    • Kateryna D. Makova,
    • and Hillary E. Sussman
    Genome Res. March 2022 32: vii-viii; Published in Advance February 17, 2022, doi:10.1101/gr.276658.122
    OPEN ACCESS ARTICLE
  4. Research: Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
    • Wilfried M. Guiblet,
    • Michael DeGiorgio,
    • Xiaoheng Cheng,
    • Francesca Chiaromonte,
    • Kristin A. Eckert,
    • Yi-Fei Huang,
    • and Kateryna D. Makova
    Genome Res. July 2021 31: 1136-1149; Published in Advance June 29, 2021, doi:10.1101/gr.269589.120
    OPEN ACCESS ARTICLE
  5. Research: Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
    • Wilfried M. Guiblet,
    • Marzia A. Cremona,
    • Monika Cechova,
    • Robert S. Harris,
    • Iva Kejnovská,
    • Eduard Kejnovsky,
    • Kristin Eckert,
    • Francesca Chiaromonte,
    • and Kateryna D. Makova
    Genome Res. December 2018 28: 1767-1778; Published in Advance November 6, 2018, doi:10.1101/gr.241257.118
    OPEN ACCESS ARTICLE
  6. Corrigendum: Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
    • Arkarachai Fungtammasan,
    • Erin Walsh,
    • Francesca Chiaromonte,
    • Kristin A. Eckert,
    • and Kateryna D. Makova
    Genome Res. October 2016 26: 1451; doi:10.1101/gr.214460.116
    OPEN ACCESS ARTICLE
  7. Method: A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
    • Marta Tomaszkiewicz,
    • Samarth Rangavittal,
    • Monika Cechova,
    • Rebeca Campos Sanchez,
    • Howard W. Fescemyer,
    • Robert Harris,
    • Danling Ye,
    • Patricia C.M. O'Brien,
    • Rayan Chikhi,
    • Oliver A. Ryder,
    • Malcolm A. Ferguson-Smith,
    • Paul Medvedev,
    • and Kateryna D. Makova
    Genome Res. April 2016 26: 530-540; Published in Advance March 2, 2016, doi:10.1101/gr.199448.115
    OPEN ACCESS ARTICLE
  8. Method: Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
    • Arkarachai Fungtammasan,
    • Guruprasad Ananda,
    • Suzanne E. Hile,
    • Marcia Shu-Wei Su,
    • Chen Sun,
    • Robert Harris,
    • Paul Medvedev,
    • Kristin Eckert,
    • and Kateryna D. Makova
    Genome Res. May 2015 25: 736-749; Published in Advance March 30, 2015, doi:10.1101/gr.185892.114
  9. Research: The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes
    • Stephen B. Montgomery,
    • David L. Goode,
    • Erika Kvikstad,
    • Cornelis A. Albers,
    • Zhengdong D. Zhang,
    • Xinmeng Jasmine Mu,
    • Guruprasad Ananda,
    • Bryan Howie,
    • Konrad J. Karczewski,
    • Kevin S. Smith,
    • Vanessa Anaya,
    • Rhea Richardson,
    • Joe Davis,
    • The 1000 Genomes Project Consortium,
    • Daniel G. MacArthur,
    • Arend Sidow,
    • Laurent Duret,
    • Mark Gerstein,
    • Kateryna D. Makova,
    • Jonathan Marchini,
    • Gil McVean,
    • and Gerton Lunter
    Genome Res. May 2013 23: 749-761; Published in Advance March 11, 2013, doi:10.1101/gr.148718.112
    OPEN ACCESS ARTICLE
  10. Research: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
    • Arkarachai Fungtammasan,
    • Erin Walsh,
    • Francesca Chiaromonte,
    • Kristin A. Eckert,
    • and Kateryna D. Makova
    Genome Res. June 2012 22: 993-1005; Published in Advance March 28, 2012, doi:10.1101/gr.134395.111
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