Searching journal content for Kasper Daniel Hansen in author.

Displaying results 1-9 of 9
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  1. Method: Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks
    • Prashanthi Ravichandran,
    • Princy Parsana,
    • Rebecca Keener,
    • Kasper D. Hansen,
    • and Alexis Battle
    Genome Res. September 2025 35: 2087-2103; Published in Advance July 17, 2025, doi:10.1101/gr.280808.125
    OPEN ACCESS ARTICLE
  2. Research: Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice
    • Leandros Boukas,
    • Teresa Romeo Luperchio,
    • Afrooz Razi,
    • Kasper D. Hansen,
    • and Hans T. Bjornsson
    Genome Res. May 2024 34: 696-710; Published in Advance May 3, 2024, doi:10.1101/gr.278416.123
  3. Research: Coexpression patterns define epigenetic regulators associated with neurological dysfunction
    • Leandros Boukas,
    • James M. Havrilla,
    • Peter F. Hickey,
    • Aaron R. Quinlan,
    • Hans T. Bjornsson,
    • and Kasper D. Hansen
    Genome Res. April 2019 29: 532-542; Published in Advance March 11, 2019, doi:10.1101/gr.239442.118
    OPEN ACCESS ARTICLE
  4. Method: Co-expression networks reveal the tissue-specific regulation of transcription and splicing
    • Ashis Saha,
    • Yungil Kim,
    • Ariel D.H. Gewirtz,
    • Brian Jo,
    • Chuan Gao,
    • Ian C. McDowell,
    • The GTEx Consortium,
    • Barbara E. Engelhardt,
    • and Alexis Battle
    Genome Res. November 2017 27: 1843-1858; Published in Advance October 11, 2017, doi:10.1101/gr.216721.116
    OPEN ACCESS ARTICLE
  5. Method: Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
    • Fan Yang,
    • Jiebiao Wang,
    • The GTEx Consortium,
    • Brandon L. Pierce,
    • and Lin S. Chen
    Genome Res. November 2017 27: 1859-1871; Published in Advance October 11, 2017, doi:10.1101/gr.216754.116
  6. Resource: Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver
    • Xin Li,
    • Yun Liu,
    • Tal Salz,
    • Kasper D. Hansen,
    • and Andrew Feinberg
    Genome Res. December 2016 26: 1730-1741; Published in Advance October 13, 2016, doi:10.1101/gr.211854.116
  7. Research: Bacterial infection remodels the DNA methylation landscape of human dendritic cells
    • Alain Pacis,
    • Ludovic Tailleux,
    • Alexander M. Morin,
    • John Lambourne,
    • Julia L. MacIsaac,
    • Vania Yotova,
    • Anne Dumaine,
    • Anne Danckaert,
    • Francesca Luca,
    • Jean-Christophe Grenier,
    • Kasper D. Hansen,
    • Brigitte Gicquel,
    • Miao Yu,
    • Athma Pai,
    • Chuan He,
    • Jenny Tung,
    • Tomi Pastinen,
    • Michael S. Kobor,
    • Roger Pique-Regi,
    • Yoav Gilad,
    • and Luis B. Barreiro
    Genome Res. December 2015 25: 1801-1811; Published in Advance September 21, 2015, doi:10.1101/gr.192005.115
  8. Research: Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization
    • Kasper D. Hansen,
    • Sarven Sabunciyan,
    • Ben Langmead,
    • Noemi Nagy,
    • Rebecca Curley,
    • Georg Klein,
    • Eva Klein,
    • Daniel Salamon,
    • and Andrew P. Feinberg
    Genome Res. February 2014 24: 177-184; Published in Advance September 25, 2013, doi:10.1101/gr.157743.113
    OPEN ACCESS ARTICLE
  9. Research: Conservation of an RNA regulatory map between Drosophila and mammals
    • Angela N. Brooks,
    • Li Yang,
    • Michael O. Duff,
    • Kasper D. Hansen,
    • Jung W. Park,
    • Sandrine Dudoit,
    • Steven E. Brenner,
    • and Brenton R. Graveley
    Genome Res. February 2011 21: 193-202; Published in Advance October 4, 2010, doi:10.1101/gr.108662.110
    OPEN ACCESS ARTICLE
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