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Kasper D. Hansen
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.
Displaying results 1-9 of
9
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Method
:
Aggregation of recount3 RNA-seq data improves inference of consensus and tissue-specific gene coexpression networks
Prashanthi Ravichandran
,
Princy Parsana
,
Rebecca Keener
,
Kasper D. Hansen
,
and
Alexis Battle
Genome Res.
September 2025
35
:
2087
-
2103
;
Published in Advance
July 17, 2025
,
doi:
10.1101/gr.280808.125
Abstract
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Research
:
Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice
Leandros Boukas
,
Teresa Romeo Luperchio
,
Afrooz Razi
,
Kasper D. Hansen
,
and
Hans T. Bjornsson
Genome Res.
May 2024
34
:
696
-
710
;
Published in Advance
May 3, 2024
,
doi:
10.1101/gr.278416.123
Abstract
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Research
:
Coexpression patterns define epigenetic regulators associated with neurological dysfunction
Leandros Boukas
,
James M. Havrilla
,
Peter F. Hickey
,
Aaron R. Quinlan
,
Hans T. Bjornsson
,
and
Kasper D. Hansen
Genome Res.
April 2019
29
:
532
-
542
;
Published in Advance
March 11, 2019
,
doi:
10.1101/gr.239442.118
Abstract
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Method
:
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
Ashis Saha
,
Yungil Kim
,
Ariel D.H. Gewirtz
,
Brian Jo
,
Chuan Gao
,
Ian C. McDowell
,
The GTEx Consortium
,
Barbara E. Engelhardt
,
and
Alexis Battle
Genome Res.
November 2017
27
:
1843
-
1858
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216721.116
Abstract
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Method
:
Identifying
cis
-mediators for
trans
-eQTLs across many human tissues using genomic mediation analysis
Fan Yang
,
Jiebiao Wang
,
The GTEx Consortium
,
Brandon L. Pierce
,
and
Lin S. Chen
Genome Res.
November 2017
27
:
1859
-
1871
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216754.116
Abstract
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Resource
:
Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver
Xin Li
,
Yun Liu
,
Tal Salz
,
Kasper D. Hansen
,
and
Andrew Feinberg
Genome Res.
December 2016
26
:
1730
-
1741
;
Published in Advance
October 13, 2016
,
doi:
10.1101/gr.211854.116
Abstract
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Research
:
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
Alain Pacis
,
Ludovic Tailleux
,
Alexander M. Morin
,
John Lambourne
,
Julia L. MacIsaac
,
Vania Yotova
,
Anne Dumaine
,
Anne Danckaert
,
Francesca Luca
,
Jean-Christophe Grenier
,
Kasper D. Hansen
,
Brigitte Gicquel
,
Miao Yu
,
Athma Pai
,
Chuan He
,
Jenny Tung
,
Tomi Pastinen
,
Michael S. Kobor
,
Roger Pique-Regi
,
Yoav Gilad
,
and
Luis B. Barreiro
Genome Res.
December 2015
25
:
1801
-
1811
;
Published in Advance
September 21, 2015
,
doi:
10.1101/gr.192005.115
Abstract
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Research
:
Large-scale hypomethylated blocks associated with Epstein-Barr virus–induced B-cell immortalization
Kasper D. Hansen
,
Sarven Sabunciyan
,
Ben Langmead
,
Noemi Nagy
,
Rebecca Curley
,
Georg Klein
,
Eva Klein
,
Daniel Salamon
,
and
Andrew P. Feinberg
Genome Res.
February 2014
24
:
177
-
184
;
Published in Advance
September 25, 2013
,
doi:
10.1101/gr.157743.113
Abstract
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Research
:
Conservation of an RNA regulatory map between
Drosophila
and mammals
Angela N. Brooks
,
Li Yang
,
Michael O. Duff
,
Kasper D. Hansen
,
Jung W. Park
,
Sandrine Dudoit
,
Steven E. Brenner
,
and
Brenton R. Graveley
Genome Res.
February 2011
21
:
193
-
202
;
Published in Advance
October 4, 2010
,
doi:
10.1101/gr.108662.110
Abstract
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