Searching journal content for Jun Wang in author.

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  1. Research: Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina
    • Meng Wang,
    • Yumei Li,
    • Jun Wang,
    • Soo Hwan Oh,
    • Yexuan Cao,
    • and Rui Chen
    Genome Res. April 2025 35: 740-754; Published in Advance March 6, 2025, doi:10.1101/gr.279167.124
  2. Method: CodonBERT large language model for mRNA vaccines
    • Sizhen Li,
    • Saeed Moayedpour,
    • Ruijiang Li,
    • Michael Bailey,
    • Saleh Riahi,
    • Lorenzo Kogler-Anele,
    • Milad Miladi,
    • Jacob Miner,
    • Fabien Pertuy,
    • Dinghai Zheng,
    • Jun Wang,
    • Akshay Balsubramani,
    • Khang Tran,
    • Minnie Zacharia,
    • Monica Wu,
    • Xiaobo Gu,
    • Ryan Clinton,
    • Carla Asquith,
    • Joseph Skaleski,
    • Lianne Boeglin,
    • Sudha Chivukula,
    • Anusha Dias,
    • Tod Strugnell,
    • Fernando Ulloa Montoya,
    • Vikram Agarwal,
    • Ziv Bar-Joseph,
    • and Sven Jager
    Genome Res. July 2024 34: 1027-1035; Published in Advance July 1, 2024, doi:10.1101/gr.278870.123
  3. Method: Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model
    • Li Tang,
    • Matthew C. Hill,
    • Jun Wang,
    • Jianxin Wang,
    • James F. Martin,
    • and Min Li
    Genome Res. December 2020 30: 1835-1845; Published in Advance November 12, 2020, doi:10.1101/gr.264606.120
  4. Resource: Assembly and analysis of 100 full MHC haplotypes from the Danish population
    • Jacob M. Jensen,
    • Palle Villesen,
    • Rune M. Friborg,
    • The Danish Pan-Genome Consortium,
    • Thomas Mailund,
    • Søren Besenbacher,
    • and Mikkel H. Schierup
    Genome Res. September 2017 27: 1597-1607; Published in Advance August 3, 2017, doi:10.1101/gr.218891.116
    OPEN ACCESS ARTICLE
  5. Research: SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes
    • Yue Shen,
    • Giovanni Stracquadanio,
    • Yun Wang,
    • Kun Yang,
    • Leslie A. Mitchell,
    • Yaxin Xue,
    • Yizhi Cai,
    • Tai Chen,
    • Jessica S. Dymond,
    • Kang Kang,
    • Jianhui Gong,
    • Xiaofan Zeng,
    • Yongfen Zhang,
    • Yingrui Li,
    • Qiang Feng,
    • Xun Xu,
    • Jun Wang,
    • Jian Wang,
    • Huanming Yang,
    • Jef D. Boeke,
    • and Joel S. Bader
    Genome Res. January 2016 26: 36-49; Published in Advance November 13, 2015, doi:10.1101/gr.193433.115
    OPEN ACCESS ARTICLE
  6. Research: Epigenetic modification and inheritance in sexual reversal of fish
    • Changwei Shao,
    • Qiye Li,
    • Songlin Chen,
    • Pei Zhang,
    • Jinmin Lian,
    • Qiaomu Hu,
    • Bing Sun,
    • Lijun Jin,
    • Shanshan Liu,
    • Zongji Wang,
    • Hongmei Zhao,
    • Zonghui Jin,
    • Zhuo Liang,
    • Yangzhen Li,
    • Qiumei Zheng,
    • Yong Zhang,
    • Jun Wang,
    • and Guojie Zhang
    Genome Res. April 2014 24: 604-615; Published in Advance February 2, 2014, doi:10.1101/gr.162172.113
  7. Research: Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma
    • Zhengyan Kan,
    • Hancheng Zheng,
    • Xiao Liu,
    • Shuyu Li,
    • Thomas D. Barber,
    • Zhuolin Gong,
    • Huan Gao,
    • Ke Hao,
    • Melinda D. Willard,
    • Jiangchun Xu,
    • Robert Hauptschein,
    • Paul A. Rejto,
    • Julio Fernandez,
    • Guan Wang,
    • Qinghui Zhang,
    • Bo Wang,
    • Ronghua Chen,
    • Jian Wang,
    • Nikki P. Lee,
    • Wei Zhou,
    • Zhao Lin,
    • Zhiyu Peng,
    • Kang Yi,
    • Shengpei Chen,
    • Lin Li,
    • Xiaomei Fan,
    • Jie Yang,
    • Rui Ye,
    • Jia Ju,
    • Kai Wang,
    • Heather Estrella,
    • Shibing Deng,
    • Ping Wei,
    • Ming Qiu,
    • Isabella H. Wulur,
    • Jiangang Liu,
    • Mariam E. Ehsani,
    • Chunsheng Zhang,
    • Andrey Loboda,
    • Wing Kin Sung,
    • Amit Aggarwal,
    • Ronnie T. Poon,
    • Sheung Tat Fan,
    • Jun Wang,
    • James Hardwick,
    • Christoph Reinhard,
    • Hongyue Dai,
    • Yingrui Li,
    • John M. Luk,
    • and Mao Mao
    Genome Res. September 2013 23: 1422-1433; Published in Advance June 20, 2013, doi:10.1101/gr.154492.113
    OPEN ACCESS ARTICLE
  8. Resource: The genome of the pear (Pyrus bretschneideri Rehd.)
    • Jun Wu,
    • Zhiwen Wang,
    • Zebin Shi,
    • Shu Zhang,
    • Ray Ming,
    • Shilin Zhu,
    • M. Awais Khan,
    • Shutian Tao,
    • Schuyler S. Korban,
    • Hao Wang,
    • Nancy J. Chen,
    • Takeshi Nishio,
    • Xun Xu,
    • Lin Cong,
    • Kaijie Qi,
    • Xiaosan Huang,
    • Yingtao Wang,
    • Xiang Zhao,
    • Juyou Wu,
    • Cao Deng,
    • Caiyun Gou,
    • Weili Zhou,
    • Hao Yin,
    • Gaihua Qin,
    • Yuhui Sha,
    • Ye Tao,
    • Hui Chen,
    • Yanan Yang,
    • Yue Song,
    • Dongliang Zhan,
    • Juan Wang,
    • Leiting Li,
    • Meisong Dai,
    • Chao Gu,
    • Yuezhi Wang,
    • Daihu Shi,
    • Xiaowei Wang,
    • Huping Zhang,
    • Liang Zeng,
    • Danman Zheng,
    • Chunlei Wang,
    • Maoshan Chen,
    • Guangbiao Wang,
    • Lin Xie,
    • Valpuri Sovero,
    • Shoufeng Sha,
    • Wenjiang Huang,
    • Shujun Zhang,
    • Mingyue Zhang,
    • Jiangmei Sun,
    • Linlin Xu,
    • Yuan Li,
    • Xing Liu,
    • Qingsong Li,
    • Jiahui Shen,
    • Junyi Wang,
    • Robert E. Paull,
    • Jeffrey L. Bennetzen,
    • Jun Wang,
    • and Shaoling Zhang
    Genome Res. February 2013 23: 396-408; Published in Advance November 13, 2012, doi:10.1101/gr.144311.112
    OPEN ACCESS ARTICLE
  9. Resource: SOAPindel: Efficient identification of indels from short paired reads
    • Shengting Li,
    • Ruiqiang Li,
    • Heng Li,
    • Jianliang Lu,
    • Yingrui Li,
    • Lars Bolund,
    • Mikkel H. Schierup,
    • and Jun Wang
    Genome Res. January 2013 23: 195-200; Published in Advance September 12, 2012, doi:10.1101/gr.132480.111
  10. Research: The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
    • Eva H. Stukenbrock,
    • Thomas Bataillon,
    • Julien Y. Dutheil,
    • Troels T. Hansen,
    • Ruiqiang Li,
    • Marcello Zala,
    • Bruce A. McDonald,
    • Jun Wang,
    • and Mikkel H. Schierup
    Genome Res. December 2011 21: 2157-2166; Published in Advance October 12, 2011, doi:10.1101/gr.118851.110
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