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Jun Li
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Research
:
Extreme heterochiasmy and high rates of sex-reversed recombination result in large yet homomorphic sex chromosomes in the Emei moustache toad
Siyu Xie
,
Jun Li
,
Wanyan Chen
,
Lydia J.M. Fong
,
Chunhua Huang
,
Yan Feng
,
Qingbo Ai
,
Mian Zhao
,
Judith E. Mank
,
and
Hua Wu
Genome Res.
June 2025
35
:
1325
-
1336
;
Published in Advance
April 24, 2025
,
doi:
10.1101/gr.280161.124
Abstract
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Method
:
Nanopore strand-specific mismatch enables de novo detection of bacterial DNA modifications
Xudong Liu
,
Ying Ni
,
Lianwei Ye
,
Zhihao Guo
,
Lu Tan
,
Jun Li
,
Mengsu Yang
,
Sheng Chen
,
and
Runsheng Li
Genome Res.
November 2024
34
:
2025
-
2038
;
Published in Advance
October 2, 2024
,
doi:
10.1101/gr.279012.124
Abstract
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Method
:
Ultrafast and scalable variant annotation and prioritization with big functional genomics data
Dandan Huang
,
Xianfu Yi
,
Yao Zhou
,
Hongcheng Yao
,
Hang Xu
,
Jianhua Wang
,
Shijie Zhang
,
Wenyan Nong
,
Panwen Wang
,
Lei Shi
,
Chenghao Xuan
,
Miaoxin Li
,
Junwen Wang
,
Weidong Li
,
Hoi Shan Kwan
,
Pak Chung Sham
,
Kai Wang
,
and
Mulin Jun Li
Genome Res.
December 2020
30
:
1789
-
1801
;
Published in Advance
October 15, 2020
,
doi:
10.1101/gr.267997.120
Abstract
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Resource
:
Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle
Lingzhao Fang
,
Wentao Cai
,
Shuli Liu
,
Oriol Canela-Xandri
,
Yahui Gao
,
Jicai Jiang
,
Konrad Rawlik
,
Bingjie Li
,
Steven G. Schroeder
,
Benjamin D. Rosen
,
Cong-jun Li
,
Tad S. Sonstegard
,
Leeson J. Alexander
,
Curtis P. Van Tassell
,
Paul M. VanRaden
,
John B. Cole
,
Ying Yu
,
Shengli Zhang
,
Albert Tenesa
,
Li Ma
,
and
George E. Liu
Genome Res.
May 2020
30
:
790
-
801
;
Published in Advance
May 18, 2020
,
doi:
10.1101/gr.250704.119
Abstract
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Research
:
Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers
Yumeng Wang
,
Xiaoyan Xu
,
Shuangxing Yu
,
Kang Jin Jeong
,
Zhicheng Zhou
,
Leng Han
,
Yiu Huen Tsang
,
Jun Li
,
Hu Chen
,
Lingegowda S. Mangala
,
Yuan Yuan
,
A. Karina Eterovic
,
Yiling Lu
,
Anil K. Sood
,
Kenneth L. Scott
,
Gordon B. Mills
,
and
Han Liang
Genome Res.
July 2017
27
:
1112
-
1125
;
Published in Advance
April 14, 2017
,
doi:
10.1101/gr.219741.116
Abstract
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Research
:
The influence of genomic context on mutation patterns in the human genome inferred from rare variants
Valerie M. Schaibley
,
Matthew Zawistowski
,
Daniel Wegmann
,
Margaret G. Ehm
,
Matthew R. Nelson
,
Pamela L. St. Jean
,
Gonçalo R. Abecasis
,
John Novembre
,
Sebastian Zöllner
,
and
Jun Z. Li
Genome Res.
December 2013
23
:
1974
-
1984
;
Published in Advance
August 29, 2013
,
doi:
10.1101/gr.154971.113
Abstract
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Method
:
Digital gene expression for non-model organisms
Lewis Z. Hong
,
Jun Li
,
Anne Schmidt-Küntzel
,
Wesley C. Warren
,
and
Gregory S. Barsh
Genome Res.
November 2011
21
:
1905
-
1915
;
Published in Advance
August 15, 2011
,
doi:
10.1101/gr.122135.111
Abstract
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Letter
:
Signals of recent positive selection in a worldwide sample of human populations
Joseph K. Pickrell
,
Graham Coop
,
John Novembre
,
Sridhar Kudaravalli
,
Jun Z. Li
,
Devin Absher
,
Balaji S. Srinivasan
,
Gregory S. Barsh
,
Richard M. Myers
,
Marcus W. Feldman
,
and
Jonathan K. Pritchard
Genome Res.
May 2009
19
:
826
-
837
;
Published in Advance
March 23, 2009
,
doi:
10.1101/gr.087577.108
Abstract
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LETTER
:
Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity
Shengfeng Huang
,
Shaochun Yuan
,
Lei Guo
,
Yanhong Yu
,
Jun Li
,
Tao Wu
,
Tong Liu
,
Manyi Yang
,
Kui Wu
,
Huiling Liu
,
Jin Ge
,
Yingcai Yu
,
Huiqing Huang
,
Meiling Dong
,
Cuiling Yu
,
Shangwu Chen
,
and
Anlong Xu
Genome Res.
July 2008
18
:
1112
-
1126
;
Published in Advance
June 18, 2008
,
doi:
10.1101/gr.069674.107
Abstract
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LETTER
:
Origin and evolution of new exons in rodents
Wen Wang
,
Hongkun Zheng
,
Shuang Yang
,
Haijing Yu
,
Jun Li
,
Huifeng Jiang
,
Jianning Su
,
Lei Yang
,
Jianguo Zhang
,
Jason McDermott
,
Ram Samudrala
,
Jian Wang
,
Huanming Yang
,
Jun Yu
,
Karsten Kristiansen
,
Gane Ka-Shu Wong
,
and
Jun Wang
Genome Res.
September 2005
15
:
1258
-
1264
;
Published in Advance
August 18, 2005
,
doi:
10.1101/gr.3929705
Abstract
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Single-cell gene signature scoring
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Convergent evolution in arid rodents
Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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