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Jun Kawai
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Research
:
Promoter architecture of mouse olfactory receptor genes
Charles Plessy
,
Giovanni Pascarella
,
Nicolas Bertin
,
Altuna Akalin
,
Claudia Carrieri
,
Anne Vassalli
,
Dejan Lazarevic
,
Jessica Severin
,
Christina Vlachouli
,
Roberto Simone
,
Geoffrey J. Faulkner
,
Jun Kawai
,
Carsten O. Daub
,
Silvia Zucchelli
,
Yoshihide Hayashizaki
,
Peter Mombaerts
,
Boris Lenhard
,
Stefano Gustincich
,
and
Piero Carninci
Genome Res.
March 2012
22
:
486
-
497
;
Published in Advance
December 22, 2011
,
doi:
10.1101/gr.126201.111
Abstract
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Methods
:
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
Michiel J.L. de Hoon
,
Ryan J. Taft
,
Takehiro Hashimoto
,
Mutsumi Kanamori-Katayama
,
Hideya Kawaji
,
Mitsuoki Kawano
,
Mami Kishima
,
Timo Lassmann
,
Geoffrey J. Faulkner
,
John S. Mattick
,
Carsten O. Daub
,
Piero Carninci
,
Jun Kawai
,
Harukazu Suzuki
,
and
Yoshihide Hayashizaki
Genome Res.
February 2010
20
:
257
-
264
;
Published in Advance
January 5, 2010
,
doi:
10.1101/gr.095273.109
Abstract
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Methods
:
Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE
Eivind Valen
,
Giovanni Pascarella
,
Alistair Chalk
,
Norihiro Maeda
,
Miki Kojima
,
Chika Kawazu
,
Mitsuyoshi Murata
,
Hiromi Nishiyori
,
Dejan Lazarevic
,
Dario Motti
,
Troels Torben Marstrand
,
Man-Hung Eric Tang
,
Xiaobei Zhao
,
Anders Krogh
,
Ole Winther
,
Takahiro Arakawa
,
Jun Kawai
,
Christine Wells
,
Carsten Daub
,
Matthias Harbers
,
Yoshihide Hayashizaki
,
Stefano Gustincich
,
Albin Sandelin
,
and
Piero Carninci
Genome Res.
February 2009
19
:
255
-
265
;
Published in Advance
December 11, 2008
,
doi:
10.1101/gr.084541.108
Abstract
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LETTER
:
Evolutionary turnover of mammalian transcription start sites
Martin C. Frith
,
Jasmina Ponjavic
,
David Fredman
,
Chikatoshi Kai
,
Jun Kawai
,
Piero Carninci
,
Yoshihide Hayshizaki
,
and
Albin Sandelin
Genome Res.
June 2006
16
:
713
-
722
;
Published in Advance
May 10, 2006
,
doi:
10.1101/gr.5031006
Abstract
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Methods
:
DNA Book
Jun Kawai
and
Yoshihide Hayashizaki
Genome Res.
June 2003
13
:
1488
-
1495
;
doi:
10.1101/gr.914203
Abstract
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ARTICLE
:
Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia
Piero Carninci
,
Kazunori Waki
,
Toshiyuki Shiraki
,
Hideaki Konno
,
Kazuhiro Shibata
,
Masayoshi Itoh
,
Katsunori Aizawa
,
Takahiro Arakawa
,
Yoshiyuki Ishii
,
Daisuke Sasaki
,
Hidemasa Bono
,
Shinji Kondo
,
Yuichi Sugahara
,
Rintaro Saito
,
Naoki Osato
,
Shiro Fukuda
,
Kenjiro Sato
,
Akira Watahiki
,
Tomoko Hirozane-Kishikawa
,
Mari Nakamura
,
Yuko Shibata
,
Ayako Yasunishi
,
Noriko Kikuchi
,
Atsushi Yoshiki
,
Moriaki Kusakabe
,
Stefano Gustincich
,
Kirk Beisel
,
William Pavan
,
Vassilis Aidinis
,
Akira Nakagawara
,
William A. Held
,
Hiroo Iwata
,
Tomohiro Kono
,
Hiromitsu Nakauchi
,
Paul Lyons
,
Christine Wells
,
David A. Hume
,
Michela Fagiolini
,
Takao K. Hensch
,
Michelle Brinkmeier
,
Sally Camper
,
Junji Hirota
,
Peter Mombaerts
,
Masami Muramatsu
,
Yasushi Okazaki
,
Jun Kawai
,
and
Yoshihide Hayashizaki
Genome Res.
June 2003
13
:
1273
-
1289
;
doi:
10.1101/gr.1119703
Abstract
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METHODS
:
A Computer-Based Method of Selecting Clones for a Full-Length cDNA Project: Simultaneous Collection of Negligibly Redundant and Variant cDNAs
Naoki Osato
,
Masayoshi Itoh
,
Hideaki Konno
,
Shinji Kondo
,
Kazuhiro Shibata
,
Piero Carninci
,
Toshiyuki Shiraki
,
Akira Shinagawa
,
Takahiro Arakawa
,
Shoshi Kikuchi
,
Kouji Sato
,
Jun Kawai
,
and
Yoshihide Hayashizaki
Genome Res.
July 1, 2002
12
:
1127
-
1134
;
Published in Advance
June 18, 2002
,
doi:
10.1101/gr.75202
Abstract
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LETTER
:
Exploration of Novel Motifs Derived from Mouse cDNA Sequences
Hideya Kawaji
,
Christian Schönbach
,
Yo Matsuo
,
Jun Kawai
,
Yasushi Okazaki
,
Yoshihide Hayashizaki
,
and
Hideo Matsuda
Genome Res.
March 1, 2002
12
:
367
-
378
;
Published in Advance
February 15, 2002
,
doi:
10.1101/gr.193702
Abstract
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LETTER
:
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata
,
Masayoshi Itoh
,
Katsunori Aizawa
,
Sumiharu Nagaoka
,
Nobuya Sasaki
,
Piero Carninci
,
Hideaki Konno
,
Junichi Akiyama
,
Katsuo Nishi
,
Tokuji Kitsunai
,
Hideo Tashiro
,
Mari Itoh
,
Noriko Sumi
,
Yoshiyuki Ishii
,
Shin Nakamura
,
Makoto Hazama
,
Tsutomu Nishine
,
Akira Harada
,
Rintaro Yamamoto
,
Hiroyuki Matsumoto
,
Sumito Sakaguchi
,
Takashi Ikegami
,
Katsuya Kashiwagi
,
Syuji Fujiwake
,
Kouji Inoue
,
Yoshiyuki Togawa
,
Masaki Izawa
,
Eiji Ohara
,
Masanori Watahiki
,
Yuko Yoneda
,
Tomokazu Ishikawa
,
Kaori Ozawa
,
Takumi Tanaka
,
Shuji Matsuura
,
Jun Kawai
,
Yasushi Okazaki
,
Masami Muramatsu
,
Yorinao Inoue
,
Akira Kira
,
and
Yoshihide Hayashizaki
Genome Res.
November 1, 2000
10
:
1757
-
1771
;
doi:
10.1101/gr.152600
Abstract
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LETTER
:
Automated Filtration-Based High-Throughput Plasmid Preparation System
Masayoshi Itoh
,
Tokuji Kitsunai
,
Junichi Akiyama
,
Kazuhiro Shibata
,
Masaki Izawa
,
Jun Kawai
,
Yasuhiro Tomaru
,
Piero Carninci
,
Yuko Shibata
,
Yasuhiro Ozawa
,
Masami Muramatsu
,
Yasushi Okazaki
,
and
Yoshihide Hayashizaki
Genome Res.
May 1, 1999
9
:
463
-
470
;
doi:
10.1101/gr.9.5.463
Abstract
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