Searching journal content for Joseph F. Costello in author.

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  1. Research: Recurrent epimutations activate gene body promoters in primary glioblastoma
    • Raman P. Nagarajan,
    • Bo Zhang,
    • Robert J.A. Bell,
    • Brett E. Johnson,
    • Adam B. Olshen,
    • Vasavi Sundaram,
    • Daofeng Li,
    • Ashley E. Graham,
    • Aaron Diaz,
    • Shaun D. Fouse,
    • Ivan Smirnov,
    • Jun Song,
    • Pamela L. Paris,
    • Ting Wang,
    • and Joseph F. Costello
    Genome Res. May 2014 24: 761-774; Published in Advance April 7, 2014, doi:10.1101/gr.164707.113
  2. Method: Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
    • Bo Zhang,
    • Yan Zhou,
    • Nan Lin,
    • Rebecca F. Lowdon,
    • Chibo Hong,
    • Raman P. Nagarajan,
    • Jeffrey B. Cheng,
    • Daofeng Li,
    • Michael Stevens,
    • Hyung Joo Lee,
    • Xiaoyun Xing,
    • Jia Zhou,
    • Vasavi Sundaram,
    • GiNell Elliott,
    • Junchen Gu,
    • Taoping Shi,
    • Philippe Gascard,
    • Mahvash Sigaroudinia,
    • Thea D. Tlsty,
    • Theresa Kadlecek,
    • Arthur Weiss,
    • Henriette O’Geen,
    • Peggy J. Farnham,
    • Cécile L. Maire,
    • Keith L. Ligon,
    • Pamela A.F. Madden,
    • Angela Tam,
    • Richard Moore,
    • Martin Hirst,
    • Marco A. Marra,
    • Baoxue Zhang,
    • Joseph F. Costello,
    • and Ting Wang
    Genome Res. September 2013 23: 1522-1540; Published in Advance June 26, 2013, doi:10.1101/gr.156539.113
    OPEN ACCESS ARTICLE
  3. Method: Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods
    • Michael Stevens,
    • Jeffrey B. Cheng,
    • Daofeng Li,
    • Mingchao Xie,
    • Chibo Hong,
    • Cécile L. Maire,
    • Keith L. Ligon,
    • Martin Hirst,
    • Marco A. Marra,
    • Joseph F. Costello,
    • and Ting Wang
    Genome Res. September 2013 23: 1541-1553; Published in Advance June 26, 2013, doi:10.1101/gr.152231.112
  4. Method: Spark: A navigational paradigm for genomic data exploration
    • Cydney B. Nielsen,
    • Hamid Younesy,
    • Henriette O'Geen,
    • Xiaoqin Xu,
    • Andrew R. Jackson,
    • Aleksandar Milosavljevic,
    • Ting Wang,
    • Joseph F. Costello,
    • Martin Hirst,
    • Peggy J. Farnham,
    • and Steven J.M. Jones
    Genome Res. November 2012 22: 2262-2269; Published in Advance September 7, 2012, doi:10.1101/gr.140665.112
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