Searching journal content for Jose M. Gonzalez in author.

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  1. Resource: Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci
    • Jonathan M. Mudge,
    • Irwin Jungreis,
    • Toby Hunt,
    • Jose Manuel Gonzalez,
    • James C. Wright,
    • Mike Kay,
    • Claire Davidson,
    • Stephen Fitzgerald,
    • Ruth Seal,
    • Susan Tweedie,
    • Liang He,
    • Robert M. Waterhouse,
    • Yue Li,
    • Elspeth Bruford,
    • Jyoti S. Choudhary,
    • Adam Frankish,
    • and Manolis Kellis
    Genome Res. December 2019 29: 2073-2087; Published in Advance September 19, 2019, doi:10.1101/gr.246462.118
    OPEN ACCESS ARTICLE
  2. Method: Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
    • Cédric Howald,
    • Andrea Tanzer,
    • Jacqueline Chrast,
    • Felix Kokocinski,
    • Thomas Derrien,
    • Nathalie Walters,
    • Jose M. Gonzalez,
    • Adam Frankish,
    • Bronwen L. Aken,
    • Thibaut Hourlier,
    • Jan-Hinnerk Vogel,
    • Simon White,
    • Stephen Searle,
    • Jennifer Harrow,
    • Tim J. Hubbard,
    • Roderic Guigó,
    • and Alexandre Reymond
    Genome Res. September 2012 22: 1698-1710; doi:10.1101/gr.134478.111
    OPEN ACCESS ARTICLE
  3. Resource: GENCODE: The reference human genome annotation for The ENCODE Project
    • Jennifer Harrow,
    • Adam Frankish,
    • Jose M. Gonzalez,
    • Electra Tapanari,
    • Mark Diekhans,
    • Felix Kokocinski,
    • Bronwen L. Aken,
    • Daniel Barrell,
    • Amonida Zadissa,
    • Stephen Searle,
    • If Barnes,
    • Alexandra Bignell,
    • Veronika Boychenko,
    • Toby Hunt,
    • Mike Kay,
    • Gaurab Mukherjee,
    • Jeena Rajan,
    • Gloria Despacio-Reyes,
    • Gary Saunders,
    • Charles Steward,
    • Rachel Harte,
    • Michael Lin,
    • Cédric Howald,
    • Andrea Tanzer,
    • Thomas Derrien,
    • Jacqueline Chrast,
    • Nathalie Walters,
    • Suganthi Balasubramanian,
    • Baikang Pei,
    • Michael Tress,
    • Jose Manuel Rodriguez,
    • Iakes Ezkurdia,
    • Jeltje van Baren,
    • Michael Brent,
    • David Haussler,
    • Manolis Kellis,
    • Alfonso Valencia,
    • Alexandre Reymond,
    • Mark Gerstein,
    • Roderic Guigó,
    • and Tim J. Hubbard
    Genome Res. September 2012 22: 1760-1774; doi:10.1101/gr.135350.111
    OPEN ACCESS ARTICLE
  4. Resource: The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Thomas Derrien,
    • Rory Johnson,
    • Giovanni Bussotti,
    • Andrea Tanzer,
    • Sarah Djebali,
    • Hagen Tilgner,
    • Gregory Guernec,
    • David Martin,
    • Angelika Merkel,
    • David G. Knowles,
    • Julien Lagarde,
    • Lavanya Veeravalli,
    • Xiaoan Ruan,
    • Yijun Ruan,
    • Timo Lassmann,
    • Piero Carninci,
    • James B. Brown,
    • Leonard Lipovich,
    • Jose M. Gonzalez,
    • Mark Thomas,
    • Carrie A. Davis,
    • Ramin Shiekhattar,
    • Thomas R. Gingeras,
    • Tim J. Hubbard,
    • Cedric Notredame,
    • Jennifer Harrow,
    • and Roderic Guigó
    Genome Res. September 2012 22: 1775-1789; doi:10.1101/gr.132159.111
    OPEN ACCESS ARTICLE
  5. LETTER: Comparative DNA Sequence Analysis of Wheat and Rice Genomes
    • Mark E. Sorrells,
    • Mauricio La Rota,
    • Catherine E. Bermudez-Kandianis,
    • Robert A. Greene,
    • Ramesh Kantety,
    • Jesse D. Munkvold,
    • Miftahudin,
    • Ahmed Mahmoud,
    • Xuefeng Ma,
    • Perry J. Gustafson,
    • Lili L. Qi,
    • Benjamin Echalier,
    • Bikram S. Gill,
    • David E. Matthews,
    • Gerard R. Lazo,
    • Shiaoman Chao,
    • Olin D. Anderson,
    • Hugh Edwards,
    • Anna M. Linkiewicz,
    • Jorge Dubcovsky,
    • Eduard D. Akhunov,
    • Jan Dvorak,
    • Deshui Zhang,
    • Henry T. Nguyen,
    • Junhua Peng,
    • Nora L.V. Lapitan,
    • Jose L. Gonzalez-Hernandez,
    • James A. Anderson,
    • Khwaja Hossain,
    • Venu Kalavacharla,
    • Shahryar F. Kianian,
    • Dong-Woog Choi,
    • Timothy J. Close,
    • Muharrem Dilbirligi,
    • Kulvinder S. Gill,
    • Camille Steber,
    • Mary K. Walker-Simmons,
    • Patrick E. McGuire,
    • and Calvin O. Qualset
    Genome Res. August 2003 13: 1818-1827; doi:10.1101/gr.1113003
  6. ARTICLE: The Organization and Rate of Evolution of Wheat Genomes Are Correlated With Recombination Rates Along Chromosome Arms
    • Eduard D. Akhunov,
    • Andrew W. Goodyear,
    • Shu Geng,
    • Li-Li Qi,
    • Benjamin Echalier,
    • Bikram S. Gill,
    • Miftahudin,
    • J. Perry Gustafson,
    • Gerard Lazo,
    • Shiaoman Chao,
    • Olin D. Anderson,
    • Anna M. Linkiewicz,
    • Jorge Dubcovsky,
    • Mauricio La Rota,
    • Mark E. Sorrells,
    • Deshui Zhang,
    • Henry T. Nguyen,
    • Venugopal Kalavacharla,
    • Khwaja Hossain,
    • Shahryar F. Kianian,
    • Junhua Peng,
    • Nora L.V. Lapitan,
    • Jose L. Gonzalez-Hernandez,
    • James A. Anderson,
    • Dong-Woog Choi,
    • Timothy J. Close,
    • Muharrem Dilbirligi,
    • Kulvinder S. Gill,
    • M. Kay Walker-Simmons,
    • Camille Steber,
    • Patrick E. McGuire,
    • Calvin O. Qualset,
    • and Jan Dvorak
    Genome Res. May 1, 2003 13: 753-763; Published in Advance April 14, 2003, doi:10.1101/gr.808603
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