Searching journal content for Jorg Drenkow in author.

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  1. Resource: A limited set of transcriptional programs define major cell types
    • Alessandra Breschi,
    • Manuel Muñoz-Aguirre,
    • Valentin Wucher,
    • Carrie A. Davis,
    • Diego Garrido-Martín,
    • Sarah Djebali,
    • Jesse Gillis,
    • Dmitri D. Pervouchine,
    • Anna Vlasova,
    • Alexander Dobin,
    • Chris Zaleski,
    • Jorg Drenkow,
    • Cassidy Danyko,
    • Alexandra Scavelli,
    • Ferran Reverter,
    • Michael P. Snyder,
    • Thomas R. Gingeras,
    • and Roderic Guigó
    Genome Res. July 2020 30: 1047-1059; Published in Advance July 29, 2020, doi:10.1101/gr.263186.120
    OPEN ACCESS ARTICLE
  2. Resource: Dynamics of microRNA expression during mouse prenatal development
    • Sorena Rahmanian,
    • Rabi Murad,
    • Alessandra Breschi,
    • Weihua Zeng,
    • Mark Mackiewicz,
    • Brian Williams,
    • Carrie A. Davis,
    • Brian Roberts,
    • Sarah Meadows,
    • Dianna Moore,
    • Diane Trout,
    • Chris Zaleski,
    • Alex Dobin,
    • Lei-Hoon Sei,
    • Jorg Drenkow,
    • Alex Scavelli,
    • Thomas R. Gingeras,
    • Barbara J. Wold,
    • Richard M. Myers,
    • Roderic Guigó,
    • and Ali Mortazavi
    Genome Res. November 2019 29: 1900-1909; Published in Advance October 23, 2019, doi:10.1101/gr.248997.119
    OPEN ACCESS ARTICLE
  3. ARTICLE: Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
    • France Denoeud,
    • Philipp Kapranov,
    • Catherine Ucla,
    • Adam Frankish,
    • Robert Castelo,
    • Jorg Drenkow,
    • Julien Lagarde,
    • Tyler Alioto,
    • Caroline Manzano,
    • Jacqueline Chrast,
    • Sujit Dike,
    • Carine Wyss,
    • Charlotte N. Henrichsen,
    • Nancy Holroyd,
    • Mark C. Dickson,
    • Ruth Taylor,
    • Zahra Hance,
    • Sylvain Foissac,
    • Richard M. Myers,
    • Jane Rogers,
    • Tim Hubbard,
    • Jennifer Harrow,
    • Roderic Guigó,
    • Thomas R. Gingeras,
    • Stylianos E. Antonarakis,
    • and Alexandre Reymond
    Genome Res. June 2007 17: 746-759; doi:10.1101/gr.5660607
    OPEN ACCESS ARTICLE
  4. LETTER: Structured RNAs in the ENCODE selected regions of the human genome
    • Stefan Washietl,
    • Jakob S. Pedersen,
    • Jan O. Korbel,
    • Claudia Stocsits,
    • Andreas R. Gruber,
    • Jörg Hackermüller,
    • Jana Hertel,
    • Manja Lindemeyer,
    • Kristin Reiche,
    • Andrea Tanzer,
    • Catherine Ucla,
    • Carine Wyss,
    • Stylianos E. Antonarakis,
    • France Denoeud,
    • Julien Lagarde,
    • Jorg Drenkow,
    • Philipp Kapranov,
    • Thomas R. Gingeras,
    • Roderic Guigó,
    • Michael Snyder,
    • Mark B. Gerstein,
    • Alexandre Reymond,
    • Ivo L. Hofacker,
    • and Peter F. Stadler
    Genome Res. June 2007 17: 852-864; doi:10.1101/gr.5650707
    OPEN ACCESS ARTICLE
  5. Methods: Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
    • Philipp Kapranov,
    • Jorg Drenkow,
    • Jill Cheng,
    • Jeffrey Long,
    • Gregg Helt,
    • Sujit Dike,
    • and Thomas R. Gingeras
    Genome Res. July 2005 15: 987-997; doi:10.1101/gr.3455305
  6. ARTICLE: Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22
    • Dione Kampa,
    • Jill Cheng,
    • Philipp Kapranov,
    • Mark Yamanaka,
    • Shane Brubaker,
    • Simon Cawley,
    • Jorg Drenkow,
    • Antonio Piccolboni,
    • Stefan Bekiranov,
    • Gregg Helt,
    • Hari Tammana,
    • and Thomas R. Gingeras
    Genome Res. March 2004 14: 331-342; doi:10.1101/gr.2094104
  7. LETTER: Temporal Gene Regulation During HIV-1 Infection of Human CD4+ T Cells
    • Jacques Corbeil,
    • Dennis Sheeter,
    • Davide Genini,
    • Steffney Rought,
    • Lorenzo Leoni,
    • Pinyi Du,
    • Mark Ferguson,
    • Daniel R. Masys,
    • John B. Welsh,
    • J. Lynn Fink,
    • Roman Sasik,
    • David Huang,
    • Jorg Drenkow,
    • Douglas D. Richman,
    • and Thomas Gingeras
    Genome Res. July 1, 2001 11: 1198-1204; Published in Advance June 12, 2001, doi:10.1101/gr.180201
  8. LETTER: Comparing Genomes within the Species Mycobacterium tuberculosis
    • Midori Kato-Maeda,
    • Jeanne T. Rhee,
    • Thomas R. Gingeras,
    • Hugh Salamon,
    • Jorg Drenkow,
    • Nat Smittipat,
    • and Peter M. Small
    Genome Res. April 1, 2001 11: 547-554; doi:10.1101/gr166401
  9. METHODS: Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data
    • Hugh Salamon,
    • Midori Kato-Maeda,
    • Peter M. Small,
    • Jorg Drenkow,
    • and Thomas R. Gingeras
    Genome Res. December 1, 2000 10: 2044-2054; Published in Advance November 21, 2000, doi:10.1101/gr.152900
  10. RESEARCH: Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays
    • Thomas R. Gingeras,
    • Ghassan Ghandour,
    • Eugene Wang,
    • Anthony Berno,
    • Peter M. Small,
    • Francis Drobniewski,
    • David Alland,
    • Edward Desmond,
    • Mark Holodniy,
    • and Jorg Drenkow
    Genome Res. May 1, 1998 8: 435-448; doi:10.1101/gr.8.5.435
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