Searching journal content for John Quackenbush in author.

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  1. Method: Spatial Cellular Networks from omics data with SpaCeNet
    • Stefan Schrod,
    • Niklas Lück,
    • Robert Lohmayer,
    • Stefan Solbrig,
    • Dennis Völkl,
    • Tina Wipfler,
    • Katherine H. Shutta,
    • Marouen Ben Guebila,
    • Andreas Schäfer,
    • Tim Beißbarth,
    • Helena U. Zacharias,
    • Peter J. Oefner,
    • John Quackenbush,
    • and Michael Altenbuchinger
    Genome Res. September 2024 34: 1371-1383; Published in Advance September 4, 2024, doi:10.1101/gr.279125.124
  2. Method: Bayesian inference of sample-specific coexpression networks
    • Enakshi Saha,
    • Viola Fanfani,
    • Panagiotis Mandros,
    • Marouen Ben Guebila,
    • Jonas Fischer,
    • Katherine H. Shutta,
    • Dawn L. DeMeo,
    • Camila M. Lopes-Ramos,
    • and John Quackenbush
    Genome Res. September 2024 34: 1397-1410; Published in Advance August 12, 2024, doi:10.1101/gr.279117.124
    OPEN ACCESS ARTICLE
  3. Method: Predicting genotype-specific gene regulatory networks
    • Deborah Weighill,
    • Marouen Ben Guebila,
    • Kimberly Glass,
    • John Quackenbush,
    • and John Platig
    Genome Res. March 2022 32: 524-533; Published in Advance February 22, 2022, doi:10.1101/gr.275107.120
    OPEN ACCESS ARTICLE
  4. LETTER: Uneven chromosome contraction and expansion in the maize genome
    • Rémy Bruggmann,
    • Arvind K. Bharti,
    • Heidrun Gundlach,
    • Jinsheng Lai,
    • Sarah Young,
    • Ana C. Pontaroli,
    • Fusheng Wei,
    • Georg Haberer,
    • Galina Fuks,
    • Chunguang Du,
    • Christina Raymond,
    • Matt C. Estep,
    • Renyi Liu,
    • Jeffrey L. Bennetzen,
    • Agnes P. Chan,
    • Pablo D. Rabinowicz,
    • John Quackenbush,
    • W. Brad Barbazuk,
    • Rod A. Wing,
    • Bruce Birren,
    • Chad Nusbaum,
    • Steve Rounsley,
    • Klaus F.X. Mayer,
    • and Joachim Messing
    Genome Res. October 2006 16: 1241-1251; Published in Advance August 10, 2006, doi:10.1101/gr.5338906
  5. LETTER: Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage
    • Christine A. Wells,
    • Timothy Ravasi,
    • Razvan Sultana,
    • Ken Yagi,
    • Piero Carninci,
    • Hidemasa Bono,
    • Geoffrey Faulkner,
    • Yasushi Okazaki,
    • John Quackenbush,
    • David A. Hume,
    • RIKEN GER Group,
    • GSL Members,
    • and Paul A. Lyons
    Genome Res. June 2003 13: 1360-1365; doi:10.1101/gr.1056103
  6. RESOURCE: Development and Evaluation of an Automated Annotation Pipeline and cDNA Annotation System
    • Takeya Kasukawa,
    • Masaaki Furuno,
    • Itoshi Nikaido,
    • Hidemasa Bono,
    • David A. Hume,
    • Carol Bult,
    • David P. Hill,
    • Richard Baldarelli,
    • Julian Gough,
    • Alexander Kanapin,
    • Hideo Matsuda,
    • Lynn M. Schriml,
    • Yoshihide Hayashizaki,
    • Yasushi Okazaki,
    • and John Quackenbush
    Genome Res. June 2003 13: 1542-1551; doi:10.1101/gr.992803
  7. ARTICLE: Gene Expression Analyses of Arabidopsis Chromosome 2 Using a Genomic DNA Amplicon Microarray
    • Heenam Kim,
    • Erik C. Snesrud,
    • Brian Haas,
    • Foo Cheung,
    • Christopher D. Town,
    • and John Quackenbush
    Genome Res. March 1, 2003 13: 327-340; doi:10.1101/gr.552003
  8. RESOURCE: Cross-Referencing Eukaryotic Genomes: TIGR Orthologous Gene Alignments (TOGA)
    • Yuandan Lee,
    • Razvan Sultana,
    • Geo Pertea,
    • Jennifer Cho,
    • Svetlana Karamycheva,
    • Jennifer Tsai,
    • Babak Parvizi,
    • Foo Cheung,
    • Valentin Antonescu,
    • Joseph White,
    • Ingeborg Holt,
    • Feng Liang,
    • and John Quackenbush
    Genome Res. March 1, 2002 12: 493-502; doi:10.1101/gr.212002
  9. RESOURCE: Sequence Evaluation of Four Pooled-Tissue Normalized Bovine cDNA Libraries and Construction of a Gene Index for Cattle
    • Timothy P.L. Smith,
    • William M. Grosse,
    • Brad A. Freking,
    • Andrew J. Roberts,
    • Roger T. Stone,
    • Eduardo Casas,
    • James E. Wray,
    • Joseph White,
    • Jennifer Cho,
    • Scott C. Fahrenkrug,
    • Gary L. Bennett,
    • Michael P. Heaton,
    • William W. Laegreid,
    • Gary A. Rohrer,
    • Carol G. Chitko-McKown,
    • Geo Pertea,
    • Ingeborg Holt,
    • Svetlana Karamycheva,
    • Feng Liang,
    • John Quackenbush,
    • and John W. Keele
    Genome Res. April 1, 2001 11: 626-630; doi:10.1101/gr.170101
  10. RESEARCH: An STS-Based Radiation Hybrid Map of the Human Genome
    • Elizabeth A. Stewart,
    • Kathleen B. McKusick,
    • Amita Aggarwal,
    • Ewa Bajorek,
    • Shannon Brady,
    • Angela Chu,
    • Nicole Fang,
    • David Hadley,
    • Mark Harris,
    • Sami Hussain,
    • Richard Lee,
    • Annu Maratukulam,
    • Kyle O’Connor,
    • Shanti Perkins,
    • Mark Piercy,
    • Fawn Qin,
    • Tim Reif,
    • Carla Sanders,
    • Xiaohong She,
    • Wei-Lin Sun,
    • Poroshat Tabar,
    • Susan Voyticky,
    • Sid Cowles,
    • Jian-Bing Fan,
    • Chris Mader,
    • John Quackenbush,
    • Richard M. Myers,
    • and David R. Cox
    Genome Res. May 1, 1997 7: 422-433; doi:10.1101/gr.7.5.422
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