Searching journal content for Jim R. Hughes in author.

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  1. Resource: Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
    • Guanjue Xiang,
    • Xi He,
    • Belinda M. Giardine,
    • Kathryn J. Isaac,
    • Dylan J. Taylor,
    • Rajiv C. McCoy,
    • Camden Jansen,
    • Cheryl A. Keller,
    • Alexander Q. Wixom,
    • April Cockburn,
    • Amber Miller,
    • Qian Qi,
    • Yanghua He,
    • Yichao Li,
    • Jens Lichtenberg,
    • Elisabeth F. Heuston,
    • Stacie M. Anderson,
    • Jing Luan,
    • Marit W. Vermunt,
    • Feng Yue,
    • Michael E.G. Sauria,
    • Michael C. Schatz,
    • James Taylor,
    • Berthold Göttgens,
    • Jim R. Hughes,
    • Douglas R. Higgs,
    • Mitchell J. Weiss,
    • Yong Cheng,
    • Gerd A. Blobel,
    • David M. Bodine,
    • Yu Zhang,
    • Qunhua Li,
    • Shaun Mahony,
    • and Ross C. Hardison
    Genome Res. July 2024 34: 1089-1105; Published in Advance July 1, 2024, doi:10.1101/gr.277950.123
    OPEN ACCESS ARTICLE
  2. Resource: An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
    • Guanjue Xiang,
    • Cheryl A. Keller,
    • Elisabeth Heuston,
    • Belinda M. Giardine,
    • Lin An,
    • Alexander Q. Wixom,
    • Amber Miller,
    • April Cockburn,
    • Michael E.G. Sauria,
    • Kathryn Weaver,
    • Jens Lichtenberg,
    • Berthold Göttgens,
    • Qunhua Li,
    • David Bodine,
    • Shaun Mahony,
    • James Taylor,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • Yong Cheng,
    • Feng Yue,
    • Jim Hughes,
    • Douglas R. Higgs,
    • Yu Zhang,
    • and Ross C. Hardison
    Genome Res. March 2020 30: 472-484; Published in Advance March 4, 2020, doi:10.1101/gr.255760.119
    OPEN ACCESS ARTICLE
  3. Method: Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints
    • Ron Schwessinger,
    • Maria C. Suciu,
    • Simon J. McGowan,
    • Jelena Telenius,
    • Stephen Taylor,
    • Doug R. Higgs,
    • and Jim R. Hughes
    Genome Res. October 2017 27: 1730-1742; Published in Advance September 13, 2017, doi:10.1101/gr.220202.117
  4. Research: Genome-wide identification of TAL1's functional targets: Insights into its mechanisms of action in primary erythroid cells
    • Mira T. Kassouf,
    • Jim R. Hughes,
    • Stephen Taylor,
    • Simon J. McGowan,
    • Shamit Soneji,
    • Angela L. Green,
    • Paresh Vyas,
    • and Catherine Porcher
    Genome Res. August 2010 20: 1064-1083; Published in Advance June 21, 2010, doi:10.1101/gr.104935.110
  5. LETTER: Comparative Analysis of the α-Like Globin Clusters in Mouse, Rat, and Human Chromosomes Indicates a Mechanism Underlying Breaks in Conserved Synteny
    • Cristina Tufarelli,
    • Ross Hardison,
    • Webb Miller,
    • Jim Hughes,
    • Kevin Clark,
    • Nicki Ventress,
    • Anna Maria Frischauf,
    • and Douglas R. Higgs
    Genome Res. April 2004 14: 623-630; doi:10.1101/gr.2143604
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