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Jiaqian Wu
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7
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:
The completion of the Mammalian Gene Collection (MGC)
The MGC Project Team
,
Gary Temple
,
Daniela S. Gerhard
,
Rebekah Rasooly
,
Elise A. Feingold
,
Peter J. Good
,
Cristen Robinson
,
Allison Mandich
,
Jeffrey G. Derge
,
Jeanne Lewis
,
Debonny Shoaf
,
Francis S. Collins
,
Wonhee Jang
,
Lukas Wagner
,
Carolyn M. Shenmen
,
Leonie Misquitta
,
Carl F. Schaefer
,
Kenneth H. Buetow
,
Tom I. Bonner
,
Linda Yankie
,
Ming Ward
,
Lon Phan
,
Alex Astashyn
,
Garth Brown
,
Catherine Farrell
,
Jennifer Hart
,
Melissa Landrum
,
Bonnie L. Maidak
,
Michael Murphy
,
Terence Murphy
,
Bhanu Rajput
,
Lillian Riddick
,
David Webb
,
Janet Weber
,
Wendy Wu
,
Kim D. Pruitt
,
Donna Maglott
,
Adam Siepel
,
Brona Brejova
,
Mark Diekhans
,
Rachel Harte
,
Robert Baertsch
,
Jim Kent
,
David Haussler
,
Michael Brent
,
Laura Langton
,
Charles L.G. Comstock
,
Michael Stevens
,
Chaochun Wei
,
Marijke J. van Baren
,
Kourosh Salehi-Ashtiani
,
Ryan R. Murray
,
Lila Ghamsari
,
Elizabeth Mello
,
Chenwei Lin
,
Christa Pennacchio
,
Kirsten Schreiber
,
Nicole Shapiro
,
Amber Marsh
,
Elizabeth Pardes
,
Troy Moore
,
Anita Lebeau
,
Mike Muratet
,
Blake Simmons
,
David Kloske
,
Stephanie Sieja
,
James Hudson
,
Praveen Sethupathy
,
Michael Brownstein
,
Narayan Bhat
,
Joseph Lazar
,
Howard Jacob
,
Chris E. Gruber
,
Mark R. Smith
,
John McPherson
,
Angela M. Garcia
,
Preethi H. Gunaratne
,
Jiaqian Wu
,
Donna Muzny
,
Richard A. Gibbs
,
Alice C. Young
,
Gerard G. Bouffard
,
Robert W. Blakesley
,
Jim Mullikin
,
Eric D. Green
,
Mark C. Dickson
,
Alex C. Rodriguez
,
Jane Grimwood
,
Jeremy Schmutz
,
Richard M. Myers
,
Martin Hirst
,
Thomas Zeng
,
Kane Tse
,
Michelle Moksa
,
Merinda Deng
,
Kevin Ma
,
Diana Mah
,
Johnson Pang
,
Greg Taylor
,
Eric Chuah
,
Athena Deng
,
Keith Fichter
,
Anne Go
,
Stephanie Lee
,
Jing Wang
,
Malachi Griffith
,
Ryan Morin
,
Richard A. Moore
,
Michael Mayo
,
Sarah Munro
,
Susan Wagner
,
Steven J.M. Jones
,
Robert A. Holt
,
Marco A. Marra
,
Sun Lu
,
Shuwei Yang
,
James Hartigan
,
Marcus Graf
,
Ralf Wagner
,
Stanley Letovksy
,
Jacqueline C. Pulido
,
Keith Robison
,
Dominic Esposito
,
James Hartley
,
Vanessa E. Wall
,
Ralph F. Hopkins
,
Osamu Ohara
,
and
Stefan Wiemann
Genome Res.
December 2009
19
:
2324
-
2333
;
Published in Advance
September 18, 2009
,
doi:
10.1101/gr.095976.109
Abstract
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ARTICLE
:
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
Joel S. Rozowsky
,
Daniel Newburger
,
Fred Sayward
,
Jiaqian Wu
,
Greg Jordan
,
Jan O. Korbel
,
Ugrappa Nagalakshmi
,
Jin Yang
,
Deyou Zheng
,
Roderic Guigó
,
Thomas R. Gingeras
,
Sherman Weissman
,
Perry Miller
,
Michael Snyder
,
and
Mark B. Gerstein
Genome Res.
June 2007
17
:
732
-
745
;
doi:
10.1101/gr.5696007
Abstract
Full Text
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Supplemental Reseach Data
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ARTICLE
:
Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
Nathan D. Trinklein
,
Ulaş Karaöz
,
Jiaqian Wu
,
Anason Halees
,
Shelley Force Aldred
,
Patrick J. Collins
,
Deyou Zheng
,
Zhengdong D. Zhang
,
Mark B. Gerstein
,
Michael Snyder
,
Richard M. Myers
,
and
Zhiping Weng
Genome Res.
June 2007
17
:
720
-
731
;
doi:
10.1101/gr.5716607
Abstract
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OPEN ACCESS ARTICLE
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Methods
:
A tale of two templates: Automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices
Aaron E. Tenney
,
Jia Qian Wu
,
Laura Langton
,
Paul Klueh
,
Ralph Quatrano
,
and
Michael R. Brent
Genome Res.
February 2007
17
:
212
-
218
;
Published in Advance
January 8, 2007
,
doi:
10.1101/gr.5661407
Abstract
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LETTER
:
Genomic Analysis of the Nuclear Receptor Family: New Insights Into Structure, Regulation, and Evolution From the Rat Genome
Zhengdong Zhang
,
Paula E. Burch
,
Austin J. Cooney
,
Rainer B. Lanz
,
Fred A. Pereira
,
Jiaqian Wu
,
Richard A. Gibbs
,
George Weinstock
,
and
David A. Wheeler
Genome Res.
April 2004
14
:
580
-
590
;
doi:
10.1101/gr.2160004
Abstract
Full Text
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Methods
:
Accurate Identification of Novel Human Genes Through Simultaneous Gene Prediction in Human, Mouse, and Rat
Colin Dewey
,
Jia Qian Wu
,
Simon Cawley
,
Marina Alexandersson
,
Richard Gibbs
,
and
Lior Pachter
Genome Res.
April 2004
14
:
661
-
664
;
doi:
10.1101/gr.1939804
Abstract
Full Text
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Methods
:
Identification of Rat Genes by TWINSCAN Gene Prediction, RT–PCR, and Direct Sequencing
Jia Qian Wu
,
David Shteynberg
,
Manimozhiyan Arumugam
,
Richard A. Gibbs
,
and
Michael R. Brent
Genome Res.
April 2004
14
:
665
-
671
;
doi:
10.1101/gr.1959604
Abstract
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