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Jean Monlong
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.
Displaying results 1-6 of
6
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Method
:
Highly accurate assembly polishing with DeepPolisher
Mira Mastoras
,
Mobin Asri
,
Lucas Brambrink
,
Prajna Hebbar
,
Alexey Kolesnikov
,
Daniel E. Cook
,
Maria Nattestad
,
Julian Lucas
,
Taylor S. Won
,
Pi-Chuan Chang
,
Andrew Carroll
,
Benedict Paten
,
Kishwar Shafin
,
and
and the Human Pangenome Reference Consortium
Genome Res.
July 2025
35
:
1595
-
1608
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280149.124
Abstract
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Method
:
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
Ryan Lorig-Roach
,
Melissa Meredith
,
Jean Monlong
,
Miten Jain
,
Hugh E. Olsen
,
Brandy McNulty
,
David Porubsky
,
Tessa G. Montague
,
Julian K. Lucas
,
Chris Condon
,
Jordan M. Eizenga
,
Sissel Juul
,
Sean K. McKenzie
,
Sara E. Simmonds
,
Jimin Park
,
Mobin Asri
,
Sergey Koren
,
Evan E. Eichler
,
Richard Axel
,
Bruce Martin
,
Paolo Carnevali
,
Karen H. Miga
,
and
Benedict Paten
Genome Res.
March 2024
34
:
454
-
468
;
Published in Advance
April 16, 2024
,
doi:
10.1101/gr.278268.123
Abstract
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Research
:
Gaps and complex structurally variant loci in phased genome assemblies
David Porubsky
,
Mitchell R. Vollger
,
William T. Harvey
,
Allison N. Rozanski
,
Peter Ebert
,
Glenn Hickey
,
Patrick Hasenfeld
,
Ashley D. Sanders
,
Catherine Stober
,
Human Pangenome Reference Consortium
,
Jan O. Korbel
,
Benedict Paten
,
Tobias Marschall
,
and
Evan E. Eichler
Genome Res.
April 2023
33
:
496
-
510
;
Published in Advance
May 10, 2023
,
doi:
10.1101/gr.277334.122
Abstract
Full Text
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Method
:
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
Ashis Saha
,
Yungil Kim
,
Ariel D.H. Gewirtz
,
Brian Jo
,
Chuan Gao
,
Ian C. McDowell
,
The GTEx Consortium
,
Barbara E. Engelhardt
,
and
Alexis Battle
Genome Res.
November 2017
27
:
1843
-
1858
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216721.116
Abstract
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Method
:
Identifying
cis
-mediators for
trans
-eQTLs across many human tissues using genomic mediation analysis
Fan Yang
,
Jiebiao Wang
,
The GTEx Consortium
,
Brandon L. Pierce
,
and
Lin S. Chen
Genome Res.
November 2017
27
:
1859
-
1871
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216754.116
Abstract
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Research
:
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
Pedro G. Ferreira
,
Pedro Jares
,
Daniel Rico
,
Gonzalo Gómez-López
,
Alejandra Martínez-Trillos
,
Neus Villamor
,
Simone Ecker
,
Abel González-Pérez
,
David G. Knowles
,
Jean Monlong
,
Rory Johnson
,
Victor Quesada
,
Sarah Djebali
,
Panagiotis Papasaikas
,
Mónica López-Guerra
,
Dolors Colomer
,
Cristina Royo
,
Maite Cazorla
,
Magda Pinyol
,
Guillem Clot
,
Marta Aymerich
,
Maria Rozman
,
Marta Kulis
,
David Tamborero
,
Anaïs Gouin
,
Julie Blanc
,
Marta Gut
,
Ivo Gut
,
Xose S. Puente
,
David G. Pisano
,
José Ignacio Martin-Subero
,
Nuria López-Bigas
,
Armando López-Guillermo
,
Alfonso Valencia
,
Carlos López-Otín
,
Elías Campo
,
and
Roderic Guigó
Genome Res.
February 2014
24
:
212
-
226
;
Published in Advance
November 21, 2013
,
doi:
10.1101/gr.152132.112
Abstract
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