Searching journal content for Jason Gertz in author.

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  1. Research: Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements
    • Hosiana Abewe,
    • Alexandra Richey,
    • Jeffery M. Vahrenkamp,
    • Matthew Ginley-Hidinger,
    • Craig M. Rush,
    • Noel Kitchen,
    • Xiaoyang Zhang,
    • and Jason Gertz
    Genome Res. March 2025 35: 393-403; Published in Advance March 3, 2025, doi:10.1101/gr.279699.124
  2. Method: FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples
    • Jeffery M. Vahrenkamp,
    • Kathryn Szczotka,
    • Mark K. Dodson,
    • Elke A. Jarboe,
    • Andrew P. Soisson,
    • and Jason Gertz
    Genome Res. November 2019 29: 1826-1835; Published in Advance October 24, 2019, doi:10.1101/gr.249656.119
    OPEN ACCESS ARTICLE
  3. Research: Estrogen-independent molecular actions of mutant estrogen receptor 1 in endometrial cancer
    • Zannel Blanchard,
    • Jeffery M. Vahrenkamp,
    • Kristofer C. Berrett,
    • Spencer Arnesen,
    • and Jason Gertz
    Genome Res. September 2019 29: 1429-1441; Published in Advance July 30, 2019, doi:10.1101/gr.244780.118
  4. Research: Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
    • Daniel Savic,
    • Brian S. Roberts,
    • Julia B. Carleton,
    • E. Christopher Partridge,
    • Michael A. White,
    • Barak A. Cohen,
    • Gregory M. Cooper,
    • Jason Gertz,
    • and Richard M. Myers
    Genome Res. December 2015 25: 1791-1800; Published in Advance October 20, 2015, doi:10.1101/gr.191593.115
  5. Method: From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
    • Georgi K. Marinov,
    • Brian A. Williams,
    • Ken McCue,
    • Gary P. Schroth,
    • Jason Gertz,
    • Richard M. Myers,
    • and Barbara J. Wold
    Genome Res. March 2014 24: 496-510; Published in Advance December 3, 2013, doi:10.1101/gr.161034.113
    OPEN ACCESS ARTICLE
  6. Resource: Dynamic DNA methylation across diverse human cell lines and tissues
    • Katherine E. Varley,
    • Jason Gertz,
    • Kevin M. Bowling,
    • Stephanie L. Parker,
    • Timothy E. Reddy,
    • Florencia Pauli-Behn,
    • Marie K. Cross,
    • Brian A. Williams,
    • John A. Stamatoyannopoulos,
    • Gregory E. Crawford,
    • Devin M. Absher,
    • Barbara J. Wold,
    • and Richard M. Myers
    Genome Res. March 2013 23: 555-567; Published in Advance January 16, 2013, doi:10.1101/gr.147942.112
  7. Research: Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
    • Jason Gertz,
    • Timothy E. Reddy,
    • Katherine E. Varley,
    • Michael J. Garabedian,
    • and Richard M. Myers
    Genome Res. November 2012 22: 2153-2162; Published in Advance September 26, 2012, doi:10.1101/gr.135681.111
  8. Research: Widespread plasticity in CTCF occupancy linked to DNA methylation
    • Hao Wang,
    • Matthew T. Maurano,
    • Hongzhu Qu,
    • Katherine E. Varley,
    • Jason Gertz,
    • Florencia Pauli,
    • Kristen Lee,
    • Theresa Canfield,
    • Molly Weaver,
    • Richard Sandstrom,
    • Robert E. Thurman,
    • Rajinder Kaul,
    • Richard M. Myers,
    • and John A. Stamatoyannopoulos
    Genome Res. September 2012 22: 1680-1688; doi:10.1101/gr.136101.111
    OPEN ACCESS ARTICLE
  9. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  10. Research: Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
    • Timothy E. Reddy,
    • Jason Gertz,
    • Florencia Pauli,
    • Katerina S. Kucera,
    • Katherine E. Varley,
    • Kimberly M. Newberry,
    • Georgi K. Marinov,
    • Ali Mortazavi,
    • Brian A. Williams,
    • Lingyun Song,
    • Gregory E. Crawford,
    • Barbara Wold,
    • Huntington F. Willard,
    • and Richard M. Myers
    Genome Res. May 2012 22: 860-869; Published in Advance February 2, 2012, doi:10.1101/gr.131201.111
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