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Jason Gertz
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12
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Research
:
Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements
Hosiana Abewe
,
Alexandra Richey
,
Jeffery M. Vahrenkamp
,
Matthew Ginley-Hidinger
,
Craig M. Rush
,
Noel Kitchen
,
Xiaoyang Zhang
,
and
Jason Gertz
Genome Res.
March 2025
35
:
393
-
403
;
Published in Advance
March 3, 2025
,
doi:
10.1101/gr.279699.124
Abstract
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Method
:
FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples
Jeffery M. Vahrenkamp
,
Kathryn Szczotka
,
Mark K. Dodson
,
Elke A. Jarboe
,
Andrew P. Soisson
,
and
Jason Gertz
Genome Res.
November 2019
29
:
1826
-
1835
;
Published in Advance
October 24, 2019
,
doi:
10.1101/gr.249656.119
Abstract
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Research
:
Estrogen-independent molecular actions of mutant estrogen receptor 1 in endometrial cancer
Zannel Blanchard
,
Jeffery M. Vahrenkamp
,
Kristofer C. Berrett
,
Spencer Arnesen
,
and
Jason Gertz
Genome Res.
September 2019
29
:
1429
-
1441
;
Published in Advance
July 30, 2019
,
doi:
10.1101/gr.244780.118
Abstract
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Research
:
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
Daniel Savic
,
Brian S. Roberts
,
Julia B. Carleton
,
E. Christopher Partridge
,
Michael A. White
,
Barak A. Cohen
,
Gregory M. Cooper
,
Jason Gertz
,
and
Richard M. Myers
Genome Res.
December 2015
25
:
1791
-
1800
;
Published in Advance
October 20, 2015
,
doi:
10.1101/gr.191593.115
Abstract
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Method
:
From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
Georgi K. Marinov
,
Brian A. Williams
,
Ken McCue
,
Gary P. Schroth
,
Jason Gertz
,
Richard M. Myers
,
and
Barbara J. Wold
Genome Res.
March 2014
24
:
496
-
510
;
Published in Advance
December 3, 2013
,
doi:
10.1101/gr.161034.113
Abstract
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Resource
:
Dynamic DNA methylation across diverse human cell lines and tissues
Katherine E. Varley
,
Jason Gertz
,
Kevin M. Bowling
,
Stephanie L. Parker
,
Timothy E. Reddy
,
Florencia Pauli-Behn
,
Marie K. Cross
,
Brian A. Williams
,
John A. Stamatoyannopoulos
,
Gregory E. Crawford
,
Devin M. Absher
,
Barbara J. Wold
,
and
Richard M. Myers
Genome Res.
March 2013
23
:
555
-
567
;
Published in Advance
January 16, 2013
,
doi:
10.1101/gr.147942.112
Abstract
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Research
:
Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
Jason Gertz
,
Timothy E. Reddy
,
Katherine E. Varley
,
Michael J. Garabedian
,
and
Richard M. Myers
Genome Res.
November 2012
22
:
2153
-
2162
;
Published in Advance
September 26, 2012
,
doi:
10.1101/gr.135681.111
Abstract
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Research
:
Widespread plasticity in CTCF occupancy linked to DNA methylation
Hao Wang
,
Matthew T. Maurano
,
Hongzhu Qu
,
Katherine E. Varley
,
Jason Gertz
,
Florencia Pauli
,
Kristen Lee
,
Theresa Canfield
,
Molly Weaver
,
Richard Sandstrom
,
Robert E. Thurman
,
Rajinder Kaul
,
Richard M. Myers
,
and
John A. Stamatoyannopoulos
Genome Res.
September 2012
22
:
1680
-
1688
;
doi:
10.1101/gr.136101.111
Abstract
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Resource
:
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt
,
Georgi K. Marinov
,
Anshul Kundaje
,
Pouya Kheradpour
,
Florencia Pauli
,
Serafim Batzoglou
,
Bradley E. Bernstein
,
Peter Bickel
,
James B. Brown
,
Philip Cayting
,
Yiwen Chen
,
Gilberto DeSalvo
,
Charles Epstein
,
Katherine I. Fisher-Aylor
,
Ghia Euskirchen
,
Mark Gerstein
,
Jason Gertz
,
Alexander J. Hartemink
,
Michael M. Hoffman
,
Vishwanath R. Iyer
,
Youngsook L. Jung
,
Subhradip Karmakar
,
Manolis Kellis
,
Peter V. Kharchenko
,
Qunhua Li
,
Tao Liu
,
X. Shirley Liu
,
Lijia Ma
,
Aleksandar Milosavljevic
,
Richard M. Myers
,
Peter J. Park
,
Michael J. Pazin
,
Marc D. Perry
,
Debasish Raha
,
Timothy E. Reddy
,
Joel Rozowsky
,
Noam Shoresh
,
Arend Sidow
,
Matthew Slattery
,
John A. Stamatoyannopoulos
,
Michael Y. Tolstorukov
,
Kevin P. White
,
Simon Xi
,
Peggy J. Farnham
,
Jason D. Lieb
,
Barbara J. Wold
,
and
Michael Snyder
Genome Res.
September 2012
22
:
1813
-
1831
;
doi:
10.1101/gr.136184.111
Abstract
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Research
:
Effects of sequence variation on differential allelic transcription factor occupancy and gene expression
Timothy E. Reddy
,
Jason Gertz
,
Florencia Pauli
,
Katerina S. Kucera
,
Katherine E. Varley
,
Kimberly M. Newberry
,
Georgi K. Marinov
,
Ali Mortazavi
,
Brian A. Williams
,
Lingyun Song
,
Gregory E. Crawford
,
Barbara Wold
,
Huntington F. Willard
,
and
Richard M. Myers
Genome Res.
May 2012
22
:
860
-
869
;
Published in Advance
February 2, 2012
,
doi:
10.1101/gr.131201.111
Abstract
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