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Jason Ernst
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:
Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps
Ali Mortazavi
,
Shirley Pepke
,
Camden Jansen
,
Georgi K. Marinov
,
Jason Ernst
,
Manolis Kellis
,
Ross C. Hardison
,
Richard M. Myers
,
and
Barbara J. Wold
Genome Res.
December 2013
23
:
2136
-
2148
;
Published in Advance
October 29, 2013
,
doi:
10.1101/gr.158261.113
Abstract
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Research
:
Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types
Jason Ernst
and
Manolis Kellis
Genome Res.
July 2013
23
:
1142
-
1154
;
Published in Advance
April 17, 2013
,
doi:
10.1101/gr.144840.112
Abstract
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Research
:
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
Pouya Kheradpour
,
Jason Ernst
,
Alexandre Melnikov
,
Peter Rogov
,
Li Wang
,
Xiaolan Zhang
,
Jessica Alston
,
Tarjei S. Mikkelsen
,
and
Manolis Kellis
Genome Res.
May 2013
23
:
800
-
811
;
Published in Advance
March 19, 2013
,
doi:
10.1101/gr.144899.112
Abstract
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Research
:
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
Weisheng Wu
,
Yong Cheng
,
Cheryl A. Keller
,
Jason Ernst
,
Swathi Ashok Kumar
,
Tejaswini Mishra
,
Christapher Morrissey
,
Christine M. Dorman
,
Kuan-Bei Chen
,
Daniela Drautz
,
Belinda Giardine
,
Yoichiro Shibata
,
Lingyun Song
,
Max Pimkin
,
Gregory E. Crawford
,
Terrence S. Furey
,
Manolis Kellis
,
Webb Miller
,
James Taylor
,
Stephan C. Schuster
,
Yu Zhang
,
Francesca Chiaromonte
,
Gerd A. Blobel
,
Mitchell J. Weiss
,
and
Ross C. Hardison
Genome Res.
October 2011
21
:
1659
-
1671
;
Published in Advance
July 27, 2011
,
doi:
10.1101/gr.125088.111
Abstract
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Method
:
Integrating multiple evidence sources to predict transcription factor binding in the human genome
Jason Ernst
,
Heather L. Plasterer
,
Itamar Simon
,
and
Ziv Bar-Joseph
Genome Res.
April 2010
20
:
526
-
536
;
Published in Advance
March 10, 2010
,
doi:
10.1101/gr.096305.109
Abstract
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