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Jason D. Lieb
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14
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Research
:
Nucleosome fragility is associated with future transcriptional response to developmental cues and stress in
C. elegans
Tess E. Jeffers
and
Jason D. Lieb
Genome Res.
January 2017
27
:
75
-
86
;
Published in Advance
November 14, 2016
,
doi:
10.1101/gr.208173.116
Abstract
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Research
:
Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early
Drosophila
embryo
Katharine N. Schulz
,
Eliana R. Bondra
,
Arbel Moshe
,
Jacqueline E. Villalta
,
Jason D. Lieb
,
Tommy Kaplan
,
Daniel J. McKay
,
and
Melissa M. Harrison
Genome Res.
November 2015
25
:
1715
-
1726
;
Published in Advance
September 2, 2015
,
doi:
10.1101/gr.192682.115
Abstract
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Research
:
Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
Jeremy M. Simon
,
Kathryn E. Hacker
,
Darshan Singh
,
A. Rose Brannon
,
Joel S. Parker
,
Matthew Weiser
,
Thai H. Ho
,
Pei-Fen Kuan
,
Eric Jonasch
,
Terrence S. Furey
,
Jan F. Prins
,
Jason D. Lieb
,
W. Kimryn Rathmell
,
and
Ian J. Davis
Genome Res.
February 2014
24
:
241
-
250
;
Published in Advance
October 24, 2013
,
doi:
10.1101/gr.158253.113
Abstract
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Resource
:
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt
,
Georgi K. Marinov
,
Anshul Kundaje
,
Pouya Kheradpour
,
Florencia Pauli
,
Serafim Batzoglou
,
Bradley E. Bernstein
,
Peter Bickel
,
James B. Brown
,
Philip Cayting
,
Yiwen Chen
,
Gilberto DeSalvo
,
Charles Epstein
,
Katherine I. Fisher-Aylor
,
Ghia Euskirchen
,
Mark Gerstein
,
Jason Gertz
,
Alexander J. Hartemink
,
Michael M. Hoffman
,
Vishwanath R. Iyer
,
Youngsook L. Jung
,
Subhradip Karmakar
,
Manolis Kellis
,
Peter V. Kharchenko
,
Qunhua Li
,
Tao Liu
,
X. Shirley Liu
,
Lijia Ma
,
Aleksandar Milosavljevic
,
Richard M. Myers
,
Peter J. Park
,
Michael J. Pazin
,
Marc D. Perry
,
Debasish Raha
,
Timothy E. Reddy
,
Joel Rozowsky
,
Noam Shoresh
,
Arend Sidow
,
Matthew Slattery
,
John A. Stamatoyannopoulos
,
Michael Y. Tolstorukov
,
Kevin P. White
,
Simon Xi
,
Peggy J. Farnham
,
Jason D. Lieb
,
Barbara J. Wold
,
and
Michael Snyder
Genome Res.
September 2012
22
:
1813
-
1831
;
doi:
10.1101/gr.136184.111
Abstract
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Research
:
Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription
Mukund Patel
,
Jeremy M. Simon
,
Michael D. Iglesia
,
Sam B. Wu
,
Andrew W. McFadden
,
Jason D. Lieb
,
and
Ian J. Davis
Genome Res.
February 2012
22
:
259
-
270
;
Published in Advance
November 15, 2011
,
doi:
10.1101/gr.125666.111
Abstract
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Research
:
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
Bum-Kyu Lee
,
Akshay A. Bhinge
,
Anna Battenhouse
,
Ryan M. McDaniell
,
Zheng Liu
,
Lingyun Song
,
Yunyun Ni
,
Ewan Birney
,
Jason D. Lieb
,
Terrence S. Furey
,
Gregory E. Crawford
,
and
Vishwanath R. Iyer
Genome Res.
January 2012
22
:
9
-
24
;
Published in Advance
November 16, 2011
,
doi:
10.1101/gr.127597.111
Abstract
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Resource
:
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
Lingyun Song
,
Zhancheng Zhang
,
Linda L. Grasfeder
,
Alan P. Boyle
,
Paul G. Giresi
,
Bum-Kyu Lee
,
Nathan C. Sheffield
,
Stefan Gräf
,
Mikael Huss
,
Damian Keefe
,
Zheng Liu
,
Darin London
,
Ryan M. McDaniell
,
Yoichiro Shibata
,
Kimberly A. Showers
,
Jeremy M. Simon
,
Teresa Vales
,
Tianyuan Wang
,
Deborah Winter
,
Zhuzhu Zhang
,
Neil D. Clarke
,
Ewan Birney
,
Vishwanath R. Iyer
,
Gregory E. Crawford
,
Jason D. Lieb
,
and
Terrence S. Furey
Genome Res.
October 2011
21
:
1757
-
1767
;
Published in Advance
July 12, 2011
,
doi:
10.1101/gr.121541.111
Abstract
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Research
:
Broad chromosomal domains of histone modification patterns in
C. elegans
Tao Liu
,
Andreas Rechtsteiner
,
Thea A. Egelhofer
,
Anne Vielle
,
Isabel Latorre
,
Ming-Sin Cheung
,
Sevinc Ercan
,
Kohta Ikegami
,
Morten Jensen
,
Paulina Kolasinska-Zwierz
,
Heidi Rosenbaum
,
Hyunjin Shin
,
Scott Taing
,
Teruaki Takasaki
,
A. Leonardo Iniguez
,
Arshad Desai
,
Abby F. Dernburg
,
Hiroshi Kimura
,
Jason D. Lieb
,
Julie Ahringer
,
Susan Strome
,
and
X. Shirley Liu
Genome Res.
February 2011
21
:
227
-
236
;
Published in Advance
December 22, 2010
,
doi:
10.1101/gr.115519.110
Abstract
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Research
:
High nucleosome occupancy is encoded at X-linked gene promoters in
C. elegans
Sevinç Ercan
,
Yaniv Lubling
,
Eran Segal
,
and
Jason D. Lieb
Genome Res.
February 2011
21
:
237
-
244
;
Published in Advance
December 22, 2010
,
doi:
10.1101/gr.115931.110
Abstract
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Letter
:
A positive but complex association between meiotic double-strand break hotspots and open chromatin in
Saccharomyces cerevisiae
Luke E. Berchowitz
,
Sean E. Hanlon
,
Jason D. Lieb
,
and
Gregory P. Copenhaver
Genome Res.
December 2009
19
:
2245
-
2257
;
Published in Advance
October 2, 2009
,
doi:
10.1101/gr.096297.109
Abstract
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