Searching journal content for Jason D. Lieb in author.

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  1. Research: Nucleosome fragility is associated with future transcriptional response to developmental cues and stress in C. elegans
    • Tess E. Jeffers and
    • Jason D. Lieb
    Genome Res. January 2017 27: 75-86; Published in Advance November 14, 2016, doi:10.1101/gr.208173.116
  2. Research: Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
    • Katharine N. Schulz,
    • Eliana R. Bondra,
    • Arbel Moshe,
    • Jacqueline E. Villalta,
    • Jason D. Lieb,
    • Tommy Kaplan,
    • Daniel J. McKay,
    • and Melissa M. Harrison
    Genome Res. November 2015 25: 1715-1726; Published in Advance September 2, 2015, doi:10.1101/gr.192682.115
  3. Research: Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
    • Jeremy M. Simon,
    • Kathryn E. Hacker,
    • Darshan Singh,
    • A. Rose Brannon,
    • Joel S. Parker,
    • Matthew Weiser,
    • Thai H. Ho,
    • Pei-Fen Kuan,
    • Eric Jonasch,
    • Terrence S. Furey,
    • Jan F. Prins,
    • Jason D. Lieb,
    • W. Kimryn Rathmell,
    • and Ian J. Davis
    Genome Res. February 2014 24: 241-250; Published in Advance October 24, 2013, doi:10.1101/gr.158253.113
  4. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  5. Research: Tumor-specific retargeting of an oncogenic transcription factor chimera results in dysregulation of chromatin and transcription
    • Mukund Patel,
    • Jeremy M. Simon,
    • Michael D. Iglesia,
    • Sam B. Wu,
    • Andrew W. McFadden,
    • Jason D. Lieb,
    • and Ian J. Davis
    Genome Res. February 2012 22: 259-270; Published in Advance November 15, 2011, doi:10.1101/gr.125666.111
  6. Research: Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
    • Bum-Kyu Lee,
    • Akshay A. Bhinge,
    • Anna Battenhouse,
    • Ryan M. McDaniell,
    • Zheng Liu,
    • Lingyun Song,
    • Yunyun Ni,
    • Ewan Birney,
    • Jason D. Lieb,
    • Terrence S. Furey,
    • Gregory E. Crawford,
    • and Vishwanath R. Iyer
    Genome Res. January 2012 22: 9-24; Published in Advance November 16, 2011, doi:10.1101/gr.127597.111
    OPEN ACCESS ARTICLE
  7. Resource: Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • Lingyun Song,
    • Zhancheng Zhang,
    • Linda L. Grasfeder,
    • Alan P. Boyle,
    • Paul G. Giresi,
    • Bum-Kyu Lee,
    • Nathan C. Sheffield,
    • Stefan Gräf,
    • Mikael Huss,
    • Damian Keefe,
    • Zheng Liu,
    • Darin London,
    • Ryan M. McDaniell,
    • Yoichiro Shibata,
    • Kimberly A. Showers,
    • Jeremy M. Simon,
    • Teresa Vales,
    • Tianyuan Wang,
    • Deborah Winter,
    • Zhuzhu Zhang,
    • Neil D. Clarke,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • Jason D. Lieb,
    • and Terrence S. Furey
    Genome Res. October 2011 21: 1757-1767; Published in Advance July 12, 2011, doi:10.1101/gr.121541.111
    OPEN ACCESS ARTICLE
  8. Research: Broad chromosomal domains of histone modification patterns in C. elegans
    • Tao Liu,
    • Andreas Rechtsteiner,
    • Thea A. Egelhofer,
    • Anne Vielle,
    • Isabel Latorre,
    • Ming-Sin Cheung,
    • Sevinc Ercan,
    • Kohta Ikegami,
    • Morten Jensen,
    • Paulina Kolasinska-Zwierz,
    • Heidi Rosenbaum,
    • Hyunjin Shin,
    • Scott Taing,
    • Teruaki Takasaki,
    • A. Leonardo Iniguez,
    • Arshad Desai,
    • Abby F. Dernburg,
    • Hiroshi Kimura,
    • Jason D. Lieb,
    • Julie Ahringer,
    • Susan Strome,
    • and X. Shirley Liu
    Genome Res. February 2011 21: 227-236; Published in Advance December 22, 2010, doi:10.1101/gr.115519.110
    OPEN ACCESS ARTICLE
  9. Research: High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans
    • Sevinç Ercan,
    • Yaniv Lubling,
    • Eran Segal,
    • and Jason D. Lieb
    Genome Res. February 2011 21: 237-244; Published in Advance December 22, 2010, doi:10.1101/gr.115931.110
  10. Letter: A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae
    • Luke E. Berchowitz,
    • Sean E. Hanlon,
    • Jason D. Lieb,
    • and Gregory P. Copenhaver
    Genome Res. December 2009 19: 2245-2257; Published in Advance October 2, 2009, doi:10.1101/gr.096297.109
    OPEN ACCESS ARTICLE
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