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James Hicks
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Displaying results 1-7 of
7
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Method
:
Single-cell RNA-seq analysis identifies markers of resistance to targeted BRAF inhibitors in melanoma cell populations
Yu-Jui Ho
,
Naishitha Anaparthy
,
David Molik
,
Grinu Mathew
,
Toby Aicher
,
Ami Patel
,
James Hicks
,
and
Molly Gale Hammell
Genome Res.
September 2018
28
:
1353
-
1363
;
Published in Advance
July 30, 2018
,
doi:
10.1101/gr.234062.117
Abstract
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Research
:
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
Maria Nattestad
,
Sara Goodwin
,
Karen Ng
,
Timour Baslan
,
Fritz J. Sedlazeck
,
Philipp Rescheneder
,
Tyler Garvin
,
Han Fang
,
James Gurtowski
,
Elizabeth Hutton
,
Elizabeth Tseng
,
Chen-Shan Chin
,
Timothy Beck
,
Yogi Sundaravadanam
,
Melissa Kramer
,
Eric Antoniou
,
John D. McPherson
,
James Hicks
,
W. Richard McCombie
,
and
Michael C. Schatz
Genome Res.
August 2018
28
:
1126
-
1135
;
Published in Advance
June 28, 2018
,
doi:
10.1101/gr.231100.117
Abstract
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Method
:
Optimizing sparse sequencing of single cells for highly multiplex copy number profiling
Timour Baslan
,
Jude Kendall
,
Brian Ward
,
Hilary Cox
,
Anthony Leotta
,
Linda Rodgers
,
Michael Riggs
,
Sean D'Italia
,
Guoli Sun
,
Mao Yong
,
Kristy Miskimen
,
Hannah Gilmore
,
Michael Saborowski
,
Nevenka Dimitrova
,
Alexander Krasnitz
,
Lyndsay Harris
,
Michael Wigler
,
and
James Hicks
Genome Res.
May 2015
25
:
714
-
724
;
Published in Advance
April 9, 2015
,
doi:
10.1101/gr.188060.114
Abstract
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Research
:
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
Michael Regulski
,
Zhenyuan Lu
,
Jude Kendall
,
Mark T.A. Donoghue
,
Jon Reinders
,
Victor Llaca
,
Stephane Deschamps
,
Andrew Smith
,
Dan Levy
,
W. Richard McCombie
,
Scott Tingey
,
Antoni Rafalski
,
James Hicks
,
Doreen Ware
,
and
Robert A. Martienssen
Genome Res.
October 2013
23
:
1651
-
1662
;
Published in Advance
June 5, 2013
,
doi:
10.1101/gr.153510.112
Abstract
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Methods
:
Inferring tumor progression from genomic heterogeneity
Nicholas Navin
,
Alexander Krasnitz
,
Linda Rodgers
,
Kerry Cook
,
Jennifer Meth
,
Jude Kendall
,
Michael Riggs
,
Yvonne Eberling
,
Jennifer Troge
,
Vladimir Grubor
,
Dan Levy
,
Pär Lundin
,
Susanne Månér
,
Anders Zetterberg
,
James Hicks
,
and
Michael Wigler
Genome Res.
January 2010
20
:
68
-
80
;
Published in Advance
November 10, 2009
,
doi:
10.1101/gr.099622.109
Abstract
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Methods
:
High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
Emily Hodges
,
Andrew D. Smith
,
Jude Kendall
,
Zhenyu Xuan
,
Kandasamy Ravi
,
Michelle Rooks
,
Michael Q. Zhang
,
Kenny Ye
,
Arindam Bhattacharjee
,
Leonardo Brizuela
,
W. Richard McCombie
,
Michael Wigler
,
Gregory J. Hannon
,
and
James B. Hicks
Genome Res.
September 2009
19
:
1593
-
1605
;
Published in Advance
July 6, 2009
,
doi:
10.1101/gr.095190.109
Abstract
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LETTER
:
Novel patterns of genome rearrangement and their association with survival in breast cancer
James Hicks
,
Alexander Krasnitz
,
B. Lakshmi
,
Nicholas E. Navin
,
Michael Riggs
,
Evan Leibu
,
Diane Esposito
,
Joan Alexander
,
Jen Troge
,
Vladimir Grubor
,
Seungtai Yoon
,
Michael Wigler
,
Kenny Ye
,
Anne-Lise Børresen-Dale
,
Bjørn Naume
,
Ellen Schlicting
,
Larry Norton
,
Torsten Hägerström
,
Lambert Skoog
,
Gert Auer
,
Susanne Månér
,
Pär Lundin
,
and
Anders Zetterberg
Genome Res.
December 2006
16
:
1465
-
1479
;
doi:
10.1101/gr.5460106
Abstract
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