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James H. Thomas
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13
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Research
:
Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity
Cory A. Weller
,
Ilya Andreev
,
Michael J. Chambers
,
Morgan Park
,
NISC Comparative Sequencing Program
,
Joshua S. Bloom
,
and
Meru J. Sadhu
Genome Res.
May 2023
33
:
729
-
740
;
Published in Advance
May 1, 2023
,
doi:
10.1101/gr.277515.122
Abstract
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Research
:
Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
Tongwu Zhang
,
Jiyeon Choi
,
Michael A. Kovacs
,
Jianxin Shi
,
Mai Xu
,
NISC Comparative Sequencing Program
,
Melanoma Meta-Analysis Consortium
,
Alisa M. Goldstein
,
Adam J. Trower
,
D. Timothy Bishop
,
Mark M. Iles
,
David L. Duffy
,
Stuart MacGregor
,
Laufey T. Amundadottir
,
Matthew H. Law
,
Stacie K. Loftus
,
William J. Pavan
,
and
Kevin M. Brown
Genome Res.
November 2018
28
:
1621
-
1635
;
Published in Advance
October 17, 2018
,
doi:
10.1101/gr.233304.117
Abstract
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Research
:
Coevolution of retroelements and tandem zinc finger genes
James H. Thomas
and
Sean Schneider
Genome Res.
November 2011
21
:
1800
-
1812
;
Published in Advance
July 22, 2011
,
doi:
10.1101/gr.121749.111
Abstract
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Method
:
Trans
genomic capture and sequencing of primate exomes reveals new targets of positive selection
Renee D. George
,
Graham McVicker
,
Rachel Diederich
,
Sarah B. Ng
,
Alexandra P. MacKenzie
,
Willie J. Swanson
,
Jay Shendure
,
and
James H. Thomas
Genome Res.
October 2011
21
:
1686
-
1694
;
Published in Advance
July 27, 2011
,
doi:
10.1101/gr.121327.111
Abstract
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Methods
:
Use of shotgun proteomics for the identification, confirmation, and correction of
C. elegans
gene annotations
Gennifer E. Merrihew
,
Colleen Davis
,
Brent Ewing
,
Gary Williams
,
Lukas Käll
,
Barbara E. Frewen
,
William Stafford Noble
,
Phil Green
,
James H. Thomas
,
and
Michael J. MacCoss
Genome Res.
October 2008
18
:
1660
-
1669
;
Published in Advance
July 24, 2008
,
doi:
10.1101/gr.077644.108
Abstract
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LETTER
:
Quantitative evidence for conserved longevity pathways between divergent eukaryotic species
Erica D. Smith
,
Mitsuhiro Tsuchiya
,
Lindsay A. Fox
,
Nick Dang
,
Di Hu
,
Emily O. Kerr
,
Elijah D. Johnston
,
Bie N. Tchao
,
Diana N. Pak
,
K. Linnea Welton
,
Daniel E.L. Promislow
,
James H. Thomas
,
Matt Kaeberlein
,
and
Brian K. Kennedy
Genome Res.
April 2008
18
:
564
-
570
;
Published in Advance
March 13, 2008
,
doi:
10.1101/gr.074724.107
Abstract
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Podcast
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Methods
:
Efficient high-resolution deletion discovery in
Caenorhabditis elegans
by array comparative genomic hybridization
Jason S. Maydan
,
Stephane Flibotte
,
Mark L. Edgley
,
Joanne Lau
,
Rebecca R. Selzer
,
Todd A. Richmond
,
Nathan J. Pofahl
,
James H. Thomas
,
and
Donald G. Moerman
Genome Res.
March 2007
17
:
337
-
347
;
Published in Advance
January 31, 2007
,
doi:
10.1101/gr.5690307
Abstract
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LETTER
:
Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants
James H. Thomas
Genome Res.
August 2006
16
:
1017
-
1030
;
Published in Advance
July 6, 2006
,
doi:
10.1101/gr.5089806
Abstract
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Chicken Special/Resources
:
Uprobe: A genome-wide universal probe resource for comparative physical mapping in vertebrates
Wendy A. Kellner
,
Robert T. Sullivan
,
Brian H. Carlson
,
and
James W. Thomas
Genome Res.
January 2005
15
:
166
-
173
;
Published in Advance
December 8, 2004
,
doi:
10.1101/gr.3066805
Abstract
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The Chicken Genome
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LETTER
:
Pericentromeric Duplications in the Laboratory Mouse
James W. Thomas
,
Mary G. Schueler
,
Tyrone J. Summers
,
Robert W. Blakesley
,
Jennifer C. McDowell
,
Pamela J. Thomas
,
Jacquelyn R. Idol
,
Valerie V.B. Maduro
,
Shih-Queen Lee-Lin
,
Jeffrey W. Touchman
,
Gerard G. Bouffard
,
Stephen M. Beckstrom-Sternberg
,
NISC Comparative Sequencing Program
,
and
Eric D. Green
Genome Res.
January 1, 2003
13
:
55
-
63
;
Published in Advance
December 30, 2002
,
doi:
10.1101/gr.791403
Abstract
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