Searching journal content for James C. Mullikin in author.

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  1. Resource: The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals
    • Christine E. Schnitzler,
    • E. Sally Chang,
    • Justin Waletich,
    • Gonzalo Quiroga-Artigas,
    • Wai Yee Wong,
    • Anh-Dao Nguyen,
    • Sofia N. Barreira,
    • Liam B. Doonan,
    • Paul Gonzalez,
    • Sergey Koren,
    • James M. Gahan,
    • Steven M. Sanders,
    • Brian Bradshaw,
    • Timothy Q. DuBuc,
    • Febrimarsa,
    • Danielle de Jong,
    • Eric P. Nawrocki,
    • Alexandra Larson,
    • Samantha Klasfeld,
    • Sebastian G. Gornik,
    • R. Travis Moreland,
    • Tyra G. Wolfsberg,
    • Adam M. Phillippy,
    • James C. Mullikin,
    • Oleg Simakov,
    • Paulyn Cartwright,
    • Matthew Nicotra,
    • Uri Frank,
    • and Andreas D. Baxevanis
    Genome Res. March 2024 34: 498-513; Published in Advance March 20, 2024, doi:10.1101/gr.278382.123
    OPEN ACCESS ARTICLE
  2. Research: Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity
    • Cory A. Weller,
    • Ilya Andreev,
    • Michael J. Chambers,
    • Morgan Park,
    • NISC Comparative Sequencing Program,
    • Joshua S. Bloom,
    • and Meru J. Sadhu
    Genome Res. May 2023 33: 729-740; Published in Advance May 1, 2023, doi:10.1101/gr.277515.122
  3. Research: Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
    • Tongwu Zhang,
    • Jiyeon Choi,
    • Michael A. Kovacs,
    • Jianxin Shi,
    • Mai Xu,
    • NISC Comparative Sequencing Program,
    • Melanoma Meta-Analysis Consortium,
    • Alisa M. Goldstein,
    • Adam J. Trower,
    • D. Timothy Bishop,
    • Mark M. Iles,
    • David L. Duffy,
    • Stuart MacGregor,
    • Laufey T. Amundadottir,
    • Matthew H. Law,
    • Stacie K. Loftus,
    • William J. Pavan,
    • and Kevin M. Brown
    Genome Res. November 2018 28: 1621-1635; Published in Advance October 17, 2018, doi:10.1101/gr.233304.117
  4. Research: Evolutionary dynamism of the primate LRRC37 gene family
    • Giuliana Giannuzzi,
    • Priscillia Siswara,
    • Maika Malig,
    • Tomas Marques-Bonet,
    • NISC Comparative Sequencing Program,
    • James C. Mullikin,
    • Mario Ventura,
    • and Evan E. Eichler
    Genome Res. January 2013 23: 46-59; Published in Advance October 11, 2012, doi:10.1101/gr.138842.112
  5. Method: Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing
    • Jamie K. Teer,
    • Lori L. Bonnycastle,
    • Peter S. Chines,
    • Nancy F. Hansen,
    • Natsuyo Aoyama,
    • Amy J. Swift,
    • Hatice Ozel Abaan,
    • Thomas J. Albert,
    • NISC Comparative Sequencing Program,
    • Elliott H. Margulies,
    • Eric D. Green,
    • Francis S. Collins,
    • James C. Mullikin,
    • and Leslie G. Biesecker
    Genome Res. October 2010 20: 1420-1431; Published in Advance September 1, 2010, doi:10.1101/gr.106716.110
  6. Methods: A new strategy for genome assembly using short sequence reads and reduced representation libraries
    • Andrew L. Young,
    • Hatice Ozel Abaan,
    • Daniel Zerbino,
    • James C. Mullikin,
    • Ewan Birney,
    • and Elliott H. Margulies
    Genome Res. February 2010 20: 249-256; doi:10.1101/gr.097956.109
  7. Resource: The ClinSeq Project: Piloting large-scale genome sequencing for research in genomic medicine
    • Leslie G. Biesecker,
    • James C. Mullikin,
    • Flavia M. Facio,
    • Clesson Turner,
    • Praveen F. Cherukuri,
    • Robert W. Blakesley,
    • Gerard G. Bouffard,
    • Peter S. Chines,
    • Pedro Cruz,
    • Nancy F. Hansen,
    • Jamie K. Teer,
    • Baishali Maskeri,
    • Alice C. Young,
    • NISC Comparative Sequencing Program,
    • Teri A. Manolio,
    • Alexander F. Wilson,
    • Toren Finkel,
    • Paul Hwang,
    • Andrew Arai,
    • Alan T. Remaley,
    • Vandana Sachdev,
    • Robert Shamburek,
    • Richard O. Cannon,
    • and Eric D. Green
    Genome Res. September 2009 19: 1665-1674; Published in Advance July 14, 2009, doi:10.1101/gr.092841.109
  8. RESOURCE: Initial sequence and comparative analysis of the cat genome
    • Joan U. Pontius,
    • James C. Mullikin,
    • Douglas R. Smith,
    • Agencourt Sequencing Team,
    • Kerstin Lindblad-Toh,
    • Sante Gnerre,
    • Michele Clamp,
    • Jean Chang,
    • Robert Stephens,
    • Beena Neelam,
    • Natalia Volfovsky,
    • Alejandro A. Schäffer,
    • Richa Agarwala,
    • Kristina Narfström,
    • William J. Murphy,
    • Urs Giger,
    • Alfred L. Roca,
    • Agostinho Antunes,
    • Marilyn Menotti-Raymond,
    • Naoya Yuhki,
    • Jill Pecon-Slattery,
    • Warren E. Johnson,
    • Guillaume Bourque,
    • Glenn Tesler,
    • NISC Comparative Sequencing Program,
    • and Stephen J. O’Brien
    Genome Res. November 2007 17: 1675-1689; doi:10.1101/gr.6380007
  9. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  10. LETTER: An intermediate grade of finished genomic sequence suitable for comparative analyses
    • Robert W. Blakesley,
    • Nancy F. Hansen,
    • James C. Mullikin,
    • Pamela J. Thomas,
    • Jennifer C. McDowell,
    • Baishali Maskeri,
    • Alice C. Young,
    • Beatrice Benjamin,
    • Shelise Y. Brooks,
    • Bradley I. Coleman,
    • Jyoti Gupta,
    • Shi-Ling Ho,
    • Eric M. Karlins,
    • Quino L. Maduro,
    • Sirintorn Stantripop,
    • Cyrus Tsurgeon,
    • Jennifer L. Vogt,
    • Michelle A. Walker,
    • Catherine A. Masiello,
    • Xiaobin Guan,
    • NISC Comparative Sequencing Program,
    • Gerard G. Bouffard,
    • and Eric D. Green
    Genome Res. November 2004 14: 2235-2244; Published in Advance October 12, 2004, doi:10.1101/gr.2648404
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