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J. Michael Cherry
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:
Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway
Marjan Farahbod
,
Aboud Diab
,
Paul Sud
,
Meenakshi S. Kagda
,
Ian Whaling
,
Mehdi Foroozandeh
,
Ishan Goel
,
Habib Daneshpajouh
,
Benjamin Hitz
,
J. Michael Cherry
,
and
Maxwell W. Libbrecht
Genome Res.
October 6, 2025
gr.280633.125
;
Published in Advance
October 6, 2025
,
doi:
10.1101/gr.280633.125
Abstract
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:
Annotation of functional variation in personal genomes using RegulomeDB
Alan P. Boyle
,
Eurie L. Hong
,
Manoj Hariharan
,
Yong Cheng
,
Marc A. Schaub
,
Maya Kasowski
,
Konrad J. Karczewski
,
Julie Park
,
Benjamin C. Hitz
,
Shuai Weng
,
J. Michael Cherry
,
and
Michael Snyder
Genome Res.
September 2012
22
:
1790
-
1797
;
doi:
10.1101/gr.137323.112
Abstract
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:
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
Kim D. Pruitt
,
Jennifer Harrow
,
Rachel A. Harte
,
Craig Wallin
,
Mark Diekhans
,
Donna R. Maglott
,
Steve Searle
,
Catherine M. Farrell
,
Jane E. Loveland
,
Barbara J. Ruef
,
Elizabeth Hart
,
Marie-Marthe Suner
,
Melissa J. Landrum
,
Bronwen Aken
,
Sarah Ayling
,
Robert Baertsch
,
Julio Fernandez-Banet
,
Joshua L. Cherry
,
Val Curwen
,
Michael DiCuccio
,
Manolis Kellis
,
Jennifer Lee
,
Michael F. Lin
,
Michael Schuster
,
Andrew Shkeda
,
Clara Amid
,
Garth Brown
,
Oksana Dukhanina
,
Adam Frankish
,
Jennifer Hart
,
Bonnie L. Maidak
,
Jonathan Mudge
,
Michael R. Murphy
,
Terence Murphy
,
Jeena Rajan
,
Bhanu Rajput
,
Lillian D. Riddick
,
Catherine Snow
,
Charles Steward
,
David Webb
,
Janet A. Weber
,
Laurens Wilming
,
Wenyu Wu
,
Ewan Birney
,
David Haussler
,
Tim Hubbard
,
James Ostell
,
Richard Durbin
,
and
David Lipman
Genome Res.
July 2009
19
:
1316
-
1323
;
Published in Advance
June 4, 2009
,
doi:
10.1101/gr.080531.108
Abstract
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Single-cell gene signature scoring
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