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J Wang
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Displaying results 1-10 of
70
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Research
:
Mapping multitissue regulatory variants reveals a liver-centric coexpression network associated with duck egg-laying performance
Yang Xi
,
Jingjing Qi
,
Zhao Yang
,
Yutian Zeng
,
Huicong Zhang
,
Qiuyu Tao
,
Mengru Xu
,
Anqi Huang
,
Shenqiang Hu
,
Chunchun Han
,
Lili Bai
,
Jiwei Hu
,
Jiwen Wang
,
Liang Li
,
Lingzhao Fang
,
and
Hehe Liu
Genome Res.
October 2025
35
:
2211
-
2225
;
Published in Advance
September 10, 2025
,
doi:
10.1101/gr.280345.124
Abstract
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Research
:
Common
cis
-regulatory variation modifies the penetrance of pathogenic
SHROOM3
variants in craniofacial microsomia
Hao Zhu
,
Jiao Zhang
,
Soumya Rao
,
Matthew D. Durbin
,
Ying Li
,
Ruirui Lang
,
Jiqiang Liu
,
Baichuan Xiao
,
Hailin Shan
,
Ziqiu Meng
,
Jinmo Wang
,
Xiaokai Tang
,
Zhenni Shi
,
Liza L. Cox
,
Shouqin Zhao
,
Stephanie M. Ware
,
Tiong Y. Tan
,
Michelle de Silva
,
Lyndon Gallacher
,
Ting Liu
,
Jie Mi
,
Changqing Zeng
,
Hou-Feng Zheng
,
Qingguo Zhang
,
Stylianos E. Antonarakis
,
Timothy C. Cox
,
and
Yong-Biao Zhang
Genome Res.
May 2025
35
:
1065
-
1079
;
Published in Advance
April 15, 2025
,
doi:
10.1101/gr.280047.124
Abstract
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Research
:
Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina
Meng Wang
,
Yumei Li
,
Jun Wang
,
Soo Hwan Oh
,
Yexuan Cao
,
and
Rui Chen
Genome Res.
April 2025
35
:
740
-
754
;
Published in Advance
March 6, 2025
,
doi:
10.1101/gr.279167.124
Abstract
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Method
:
A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data
Siyuan Chen
,
Jiuming Wang
,
Inkyung Jung
,
Zhaowen Qiu
,
Xin Gao
,
and
Yu Li
Genome Res.
August 2024
34
:
1174
-
1184
;
Published in Advance
August 13, 2024
,
doi:
10.1101/gr.279274.124
Abstract
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Method
:
CodonBERT large language model for mRNA vaccines
Sizhen Li
,
Saeed Moayedpour
,
Ruijiang Li
,
Michael Bailey
,
Saleh Riahi
,
Lorenzo Kogler-Anele
,
Milad Miladi
,
Jacob Miner
,
Fabien Pertuy
,
Dinghai Zheng
,
Jun Wang
,
Akshay Balsubramani
,
Khang Tran
,
Minnie Zacharia
,
Monica Wu
,
Xiaobo Gu
,
Ryan Clinton
,
Carla Asquith
,
Joseph Skaleski
,
Lianne Boeglin
,
Sudha Chivukula
,
Anusha Dias
,
Tod Strugnell
,
Fernando Ulloa Montoya
,
Vikram Agarwal
,
Ziv Bar-Joseph
,
and
Sven Jager
Genome Res.
July 2024
34
:
1027
-
1035
;
Published in Advance
July 1, 2024
,
doi:
10.1101/gr.278870.123
Abstract
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Resource
:
Haplotype-resolved 3D chromatin architecture of the hybrid pig
Yu Lin
,
Jing Li
,
Yiren Gu
,
Long Jin
,
Jingyi Bai
,
Jiaman Zhang
,
Yujie Wang
,
Pengliang Liu
,
Keren Long
,
Mengnan He
,
Diyan Li
,
Can Liu
,
Ziyin Han
,
Yu Zhang
,
Xiaokai Li
,
Bo Zeng
,
Lu Lu
,
Fanli Kong
,
Ying Sun
,
Yongliang Fan
,
Xun Wang
,
Tao Wang
,
An'an Jiang
,
Jideng Ma
,
Linyuan Shen
,
Li Zhu
,
Yanzhi Jiang
,
Guoqing Tang
,
Xiaolan Fan
,
Qingyou Liu
,
Hua Li
,
Jinyong Wang
,
Li Chen
,
Liangpeng Ge
,
Xuewei Li
,
Qianzi Tang
,
and
Mingzhou Li
Genome Res.
February 2024
34
:
310
-
325
;
Published in Advance
March 13, 2024
,
doi:
10.1101/gr.278101.123
Abstract
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Method
:
Infernape uncovers cell type–specific and spatially resolved alternative polyadenylation in the brain
Bowei Kang
,
Yalan Yang
,
Kaining Hu
,
Xiangbin Ruan
,
Yi-Lin Liu
,
Pinky Lee
,
Jasper Lee
,
Jingshu Wang
,
and
Xiaochang Zhang
Genome Res.
October 2023
33
:
1774
-
1787
;
Published in Advance
October 31, 2023
,
doi:
10.1101/gr.277864.123
Abstract
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Method
:
Diffusion-enhanced characterization of 3D chromatin structure reveals its linkage to gene regulatory networks and the interactome
Yueying He
,
Yue Xue
,
Jingyao Wang
,
Yupeng Huang
,
Lu Liu
,
Yanyi Huang
,
and
Yi Qin Gao
Genome Res.
August 2023
33
:
1354
-
1368
;
Published in Advance
July 25, 2023
,
doi:
10.1101/gr.277737.123
Abstract
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Method
:
Characterization of network hierarchy reflects cell state specificity in genome organization
Jingyao Wang
,
Yue Xue
,
Yueying He
,
Hui Quan
,
Jun Zhang
,
and
Yi Qin Gao
Genome Res.
February 2023
33
:
247
-
260
;
Published in Advance
February 24, 2023
,
doi:
10.1101/gr.277206.122
Abstract
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Resource
:
dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development
Xin Huang
,
Xiaohan Tang
,
Xuemei Bai
,
Honglei Li
,
Huan Tao
,
Junting Wang
,
Yaru Li
,
Yu Sun
,
Yang Zheng
,
Xiang Xu
,
Longteng Wang
,
Yang Ding
,
Meisong Lu
,
Pingkun Zhou
,
Xiaochen Bo
,
Hao Li
,
and
Hebing Chen
Genome Res.
August 2022
32
:
1612
-
1625
;
Published in Advance
August 17, 2022
,
doi:
10.1101/gr.276744.122
Abstract
Full Text
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Single-cell gene signature scoring
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Short tandem repeat genotyping using long reads
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