Searching journal content for Ian Dunham in author.

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  1. Letter: Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level
    • Alexander W. Bruce,
    • Andrés J. López-Contreras,
    • Paul Flicek,
    • Thomas A. Down,
    • Pawandeep Dhami,
    • Shane C. Dillon,
    • Christoph M. Koch,
    • Cordelia F. Langford,
    • Ian Dunham,
    • Robert M. Andrews,
    • and David Vetrie
    Genome Res. June 2009 19: 994-1005; Published in Advance April 28, 2009, doi:10.1101/gr.089086.108
    OPEN ACCESS ARTICLE
  2. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  3. ARTICLE: The landscape of histone modifications across 1% of the human genome in five human cell lines
    • Christoph M. Koch,
    • Robert M. Andrews,
    • Paul Flicek,
    • Shane C. Dillon,
    • Ulaş Karaöz,
    • Gayle K. Clelland,
    • Sarah Wilcox,
    • David M. Beare,
    • Joanna C. Fowler,
    • Phillippe Couttet,
    • Keith D. James,
    • Gregory C. Lefebvre,
    • Alexander W. Bruce,
    • Oliver M. Dovey,
    • Peter D. Ellis,
    • Pawandeep Dhami,
    • Cordelia F. Langford,
    • Zhiping Weng,
    • Ewan Birney,
    • Nigel P. Carter,
    • David Vetrie,
    • and Ian Dunham
    Genome Res. June 2007 17: 691-707; doi:10.1101/gr.5704207
    OPEN ACCESS ARTICLE
  4. ARTICLE: Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes
    • Alvaro Rada-Iglesias,
    • Stefan Enroth,
    • Adam Ameur,
    • Christoph M. Koch,
    • Gayle K. Clelland,
    • Patricia Respuela-Alonso,
    • Sarah Wilcox,
    • Oliver M. Dovey,
    • Peter D. Ellis,
    • Cordelia F. Langford,
    • Ian Dunham,
    • Jan Komorowski,
    • and Claes Wadelius
    Genome Res. June 2007 17: 708-719; doi:10.1101/gr.5540007
    OPEN ACCESS ARTICLE
  5. Methods: Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites
    • George A. Follows,
    • Pawan Dhami,
    • Berthold Göttgens,
    • Alexander W. Bruce,
    • Peter J. Campbell,
    • Shane C. Dillon,
    • Aileen M. Smith,
    • Christoph Koch,
    • Ian J. Donaldson,
    • Mike A. Scott,
    • Ian Dunham,
    • Mary E. Janes,
    • David Vetrie,
    • and Anthony R. Green
    Genome Res. October 2006 16: 1310-1319; Published in Advance September 8, 2006, doi:10.1101/gr.5373606
  6. LETTER: The portability of tagSNPs across populations: A worldwide survey
    • Anna González-Neira,
    • Xiayi Ke,
    • Oscar Lao,
    • Francesc Calafell,
    • Arcadi Navarro,
    • David Comas,
    • Howard Cann,
    • Suzannah Bumpstead,
    • Jilur Ghori,
    • Sarah Hunt,
    • Panos Deloukas,
    • Ian Dunham,
    • Lon R. Cardon,
    • and Jaume Bertranpetit
    Genome Res. March 2006 16: 323-330; Published in Advance February 8, 2006, doi:10.1101/gr.4138406
  7. RESOURCE: Complete MHC Haplotype Sequencing for Common Disease Gene Mapping
    • C. Andrew Stewart,
    • Roger Horton,
    • Richard J.N. Allcock,
    • Jennifer L. Ashurst,
    • Alexey M. Atrazhev,
    • Penny Coggill,
    • Ian Dunham,
    • Simon Forbes,
    • Karen Halls,
    • Joanna M.M. Howson,
    • Sean J. Humphray,
    • Sarah Hunt,
    • Andrew J. Mungall,
    • Kazutoyo Osoegawa,
    • Sophie Palmer,
    • Anne N. Roberts,
    • Jane Rogers,
    • Sarah Sims,
    • Yu Wang,
    • Laurens G. Wilming,
    • John F. Elliott,
    • Pieter J. de Jong,
    • Stephen Sawcer,
    • John A. Todd,
    • John Trowsdale,
    • and Stephan Beck
    Genome Res. June 2004 14: 1176-1187; Published in Advance May 12, 2004, doi:10.1101/gr.2188104
  8. ARTICLE: Reevaluating Human Gene Annotation: A Second-Generation Analysis of Chromosome 22
    • John E. Collins,
    • Melanie E. Goward,
    • Charlotte G. Cole,
    • Luc J. Smink,
    • Elizabeth J. Huckle,
    • Sarah Knowles,
    • Jacqueline M. Bye,
    • David M. Beare,
    • and Ian Dunham
    Genome Res. January 1, 2003 13: 27-36; Published in Advance December 30, 2002, doi:10.1101/gr.695703
  9. RESOURCE: A Sequence-Based Integrated Map of Chromosome 22
    • William J. Tapper,
    • Newton E. Morton,
    • Ian Dunham,
    • Xiayi Ke,
    • and Andrew Collins
    Genome Res. July 1, 2001 11: 1290-1295; doi:10.1101/gr.161301
  10. RESOURCE: A SNP Resource for Human Chromosome 22: Extracting Dense Clusters of SNPs From the Genomic Sequence
    • Elisabeth Dawson,
    • Yuan Chen,
    • Sarah Hunt,
    • Luc J. Smink,
    • Adrienne Hunt,
    • Kate Rice,
    • Simon Livingston,
    • Suzannah Bumpstead,
    • Richard Bruskiewich,
    • Pak Sham,
    • Rocky Ganske,
    • Mark Adams,
    • Kazuhiko Kawasaki,
    • Nobuyoshi Shimizu,
    • Shinsei Minoshima,
    • Bruce Roe,
    • David Bentley,
    • and Ian Dunham
    Genome Res. January 1, 2001 11: 170-178; doi:10.1101/gr.156901
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