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Henne Holstege
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5
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Method
:
Multisample motif discovery and visualization for tandem repeats
Yaran Zhang
,
Marc Hulsman
,
Alex Salazar
,
Niccolò Tesi
,
Lydian Knoop
,
Sven van der Lee
,
Sanduni Wijesekera
,
Jana Krizova
,
Erik-Jan Kamsteeg
,
and
Henne Holstege
Genome Res.
April 2025
35
:
850
-
862
;
Published in Advance
November 13, 2024
,
doi:
10.1101/gr.279278.124
Abstract
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Method
:
Characterizing tandem repeat complexities across long-read sequencing platforms with TREAT and
otter
Niccoló Tesi
,
Alex Salazar
,
Yaran Zhang
,
Sven van der Lee
,
Marc Hulsman
,
Lydian Knoop
,
Sanduni Wijesekera
,
Jana Krizova
,
Anne-Fleur Schneider
,
Maartje Pennings
,
Kristel Sleegers
,
Erik-Jan Kamsteeg
,
Marcel Reinders
,
and
Henne Holstege
Genome Res.
November 2024
34
:
1942
-
1953
;
Published in Advance
October 15, 2024
,
doi:
10.1101/gr.279351.124
Abstract
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Research
:
A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci
Elisabeth J. van Bree
,
Rita L.F.P. Guimarães
,
Mischa Lundberg
,
Elena R. Blujdea
,
Jimi L. Rosenkrantz
,
Fred T.G. White
,
Josse Poppinga
,
Paula Ferrer-Raventós
,
Anne-Fleur E. Schneider
,
Isabella Clayton
,
David Haussler
,
Marcel J.T. Reinders
,
Henne Holstege
,
Adam D. Ewing
,
Colette Moses
,
and
Frank M.J. Jacobs
Genome Res.
April 2022
32
:
656
-
670
;
Published in Advance
March 24, 2022
,
doi:
10.1101/gr.275515.121
Abstract
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Research
:
Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis
Henne Holstege
,
Wayne Pfeiffer
,
Daoud Sie
,
Marc Hulsman
,
Thomas J. Nicholas
,
Clarence C. Lee
,
Tristen Ross
,
Jue Lin
,
Mark A. Miller
,
Bauke Ylstra
,
Hanne Meijers-Heijboer
,
Martijn H. Brugman
,
Frank J.T. Staal
,
Gert Holstege
,
Marcel J.T. Reinders
,
Timothy T. Harkins
,
Samuel Levy
,
and
Erik A. Sistermans
Genome Res.
May 2014
24
:
733
-
742
;
Published in Advance
April 23, 2014
,
doi:
10.1101/gr.162131.113
Abstract
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RESOURCE
:
A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization
Yeun-Jun Chung
,
Jos Jonkers
,
Hannah Kitson
,
Heike Fiegler
,
Sean Humphray
,
Carol Scott
,
Sarah Hunt
,
Yuejin Yu
,
Ichiko Nishijima
,
Arno Velds
,
Henne Holstege
,
Nigel Carter
,
and
Allan Bradley
Genome Res.
January 2004
14
:
188
-
196
;
doi:
10.1101/gr.1878804
Abstract
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Single-cell gene signature scoring
Chromosome engineering in 8p syndrome
Convergent evolution in arid rodents
Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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