Searching journal content for Hendrik G. Stunnenberg in author.

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  1. Research: Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes
    • Mohamed Belhocine,
    • Mathieu Simonin,
    • José David Abad Flores,
    • Agata Cieslak,
    • Iris Manosalva,
    • Lydie Pradel,
    • Charlotte Smith,
    • Eve-Lyne Mathieu,
    • Guillaume Charbonnier,
    • Joost H.A. Martens,
    • Hendrik G. Stunnenberg,
    • Muhammad Ahmad Maqbool,
    • Aneta Mikulasova,
    • Lisa J. Russell,
    • Daniel Rico,
    • Denis Puthier,
    • Pierre Ferrier,
    • Vahid Asnafi,
    • and Salvatore Spicuglia
    Genome Res. July 2022 32: 1328-1342; Published in Advance June 23, 2021, doi:10.1101/gr.266924.120
  2. Method: A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation
    • René A.M. Dirks,
    • Peter C. Thomas,
    • Haoyu Wu,
    • Robert C. Jones,
    • Hendrik G. Stunnenberg,
    • and Hendrik Marks
    Genome Res. May 2021 31: 919-933; Published in Advance March 11, 2021, doi:10.1101/gr.260745.120
  3. Research: Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
    • Raquel Ordoñez,
    • Marta Kulis,
    • Nuria Russiñol,
    • Vicente Chapaprieta,
    • Arantxa Carrasco-Leon,
    • Beatriz García-Torre,
    • Stella Charalampopoulou,
    • Guillem Clot,
    • Renée Beekman,
    • Cem Meydan,
    • Martí Duran-Ferrer,
    • Núria Verdaguer-Dot,
    • Roser Vilarrasa-Blasi,
    • Paula Soler-Vila,
    • Leire Garate,
    • Estíbaliz Miranda,
    • Edurne San José-Enériz,
    • Juan R. Rodriguez-Madoz,
    • Teresa Ezponda,
    • Rebeca Martínez-Turrilas,
    • Amaia Vilas-Zornoza,
    • David Lara-Astiaso,
    • Daphné Dupéré-Richer,
    • Joost H.A. Martens,
    • Halima El-Omri,
    • Ruba Y. Taha,
    • Maria J. Calasanz,
    • Bruno Paiva,
    • Jesus San Miguel,
    • Paul Flicek,
    • Ivo Gut,
    • Ari Melnick,
    • Constantine S. Mitsiades,
    • Jonathan D. Licht,
    • Elias Campo,
    • Hendrik G. Stunnenberg,
    • Xabier Agirre,
    • Felipe Prosper,
    • and Jose I. Martin-Subero
    Genome Res. September 2020 30: 1217-1227; Published in Advance August 20, 2020, doi:10.1101/gr.265520.120
    OPEN ACCESS ARTICLE
  4. Research: The circular RNome of primary breast cancer
    • Marcel Smid,
    • Saskia M. Wilting,
    • Katharina Uhr,
    • F. Germán Rodríguez-González,
    • Vanja de Weerd,
    • Wendy J.C. Prager-Van der Smissen,
    • Michelle van der Vlugt-Daane,
    • Anne van Galen,
    • Serena Nik-Zainal,
    • Adam Butler,
    • Sancha Martin,
    • Helen R. Davies,
    • Johan Staaf,
    • Marc J. van de Vijver,
    • Andrea L. Richardson,
    • Gaëten MacGrogan,
    • Roberto Salgado,
    • Gert G.G.M. van den Eynden,
    • Colin A. Purdie,
    • Alastair M. Thompson,
    • Carlos Caldas,
    • Paul N. Span,
    • Fred C.G.J. Sweep,
    • Peter T. Simpson,
    • Sunil R. Lakhani,
    • Steven Van Laere,
    • Christine Desmedt,
    • Angelo Paradiso,
    • Jorunn Eyfjord,
    • Annegien Broeks,
    • Anne Vincent-Salomon,
    • Andrew P. Futreal,
    • Stian Knappskog,
    • Tari King,
    • Alain Viari,
    • Anne-Lise Børresen-Dale,
    • Hendrik G. Stunnenberg,
    • Mike Stratton,
    • John A. Foekens,
    • Anieta M. Sieuwerts,
    • and John W.M. Martens
    Genome Res. March 2019 29: 356-366; Published in Advance January 28, 2019, doi:10.1101/gr.238121.118
  5. Research: Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
    • Xabier Agirre,
    • Giancarlo Castellano,
    • Marien Pascual,
    • Simon Heath,
    • Marta Kulis,
    • Victor Segura,
    • Anke Bergmann,
    • Anna Esteve,
    • Angelika Merkel,
    • Emanuele Raineri,
    • Lidia Agueda,
    • Julie Blanc,
    • David Richardson,
    • Laura Clarke,
    • Avik Datta,
    • Nuria Russiñol,
    • Ana C. Queirós,
    • Renée Beekman,
    • Juan R. Rodríguez-Madoz,
    • Edurne San José-Enériz,
    • Fang Fang,
    • Norma C. Gutiérrez,
    • José M. García-Verdugo,
    • Michael I. Robson,
    • Eric C. Schirmer,
    • Elisabeth Guruceaga,
    • Joost H.A. Martens,
    • Marta Gut,
    • Maria J. Calasanz,
    • Paul Flicek,
    • Reiner Siebert,
    • Elías Campo,
    • Jesús F. San Miguel,
    • Ari Melnick,
    • Hendrik G. Stunnenberg,
    • Ivo G. Gut,
    • Felipe Prosper,
    • and José I. Martín-Subero
    Genome Res. April 2015 25: 478-487; Published in Advance February 2, 2015, doi:10.1101/gr.180240.114
  6. Method: Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
    • Arie B. Brinkman,
    • Hongcang Gu,
    • Stefanie J.J. Bartels,
    • Yingying Zhang,
    • Filomena Matarese,
    • Femke Simmer,
    • Hendrik Marks,
    • Christoph Bock,
    • Andreas Gnirke,
    • Alexander Meissner,
    • and Hendrik G. Stunnenberg
    Genome Res. June 2012 22: 1128-1138; Published in Advance March 30, 2012, doi:10.1101/gr.133728.111
  7. Research: Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes
    • Nagesha A.S. Rao,
    • Melysia T. McCalman,
    • Panagiotis Moulos,
    • Kees-Jan Francoijs,
    • Aristotelis Chatziioannou,
    • Fragiskos N. Kolisis,
    • Michael N. Alexis,
    • Dimitra J. Mitsiou,
    • and Hendrik G. Stunnenberg
    Genome Res. September 2011 21: 1404-1416; Published in Advance July 12, 2011, doi:10.1101/gr.118042.110
  8. Research: Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis
    • Ozren Bogdanović,
    • Steven W. Long,
    • Simon J. van Heeringen,
    • Arie B. Brinkman,
    • Jose Luis Gómez-Skarmeta,
    • Hendrik G. Stunnenberg,
    • Peter L. Jones,
    • and Gert Jan C. Veenstra
    Genome Res. August 2011 21: 1313-1327; Published in Advance June 2, 2011, doi:10.1101/gr.114843.110
  9. Letter: High-resolution analysis of epigenetic changes associated with X inactivation
    • Hendrik Marks,
    • Jennifer C. Chow,
    • Sergei Denissov,
    • Kees-Jan Françoijs,
    • Neil Brockdorff,
    • Edith Heard,
    • and Hendrik G. Stunnenberg
    Genome Res. August 2009 19: 1361-1373; Published in Advance July 6, 2009, doi:10.1101/gr.092643.109
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