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Hendrik G. Stunnenberg
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Displaying results 1-9 of
9
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Research
:
Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes
Mohamed Belhocine
,
Mathieu Simonin
,
José David Abad Flores
,
Agata Cieslak
,
Iris Manosalva
,
Lydie Pradel
,
Charlotte Smith
,
Eve-Lyne Mathieu
,
Guillaume Charbonnier
,
Joost H.A. Martens
,
Hendrik G. Stunnenberg
,
Muhammad Ahmad Maqbool
,
Aneta Mikulasova
,
Lisa J. Russell
,
Daniel Rico
,
Denis Puthier
,
Pierre Ferrier
,
Vahid Asnafi
,
and
Salvatore Spicuglia
Genome Res.
July 2022
32
:
1328
-
1342
;
Published in Advance
June 23, 2021
,
doi:
10.1101/gr.266924.120
Abstract
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Method
:
A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation
René A.M. Dirks
,
Peter C. Thomas
,
Haoyu Wu
,
Robert C. Jones
,
Hendrik G. Stunnenberg
,
and
Hendrik Marks
Genome Res.
May 2021
31
:
919
-
933
;
Published in Advance
March 11, 2021
,
doi:
10.1101/gr.260745.120
Abstract
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Research
:
Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
Raquel Ordoñez
,
Marta Kulis
,
Nuria Russiñol
,
Vicente Chapaprieta
,
Arantxa Carrasco-Leon
,
Beatriz García-Torre
,
Stella Charalampopoulou
,
Guillem Clot
,
Renée Beekman
,
Cem Meydan
,
Martí Duran-Ferrer
,
Núria Verdaguer-Dot
,
Roser Vilarrasa-Blasi
,
Paula Soler-Vila
,
Leire Garate
,
Estíbaliz Miranda
,
Edurne San José-Enériz
,
Juan R. Rodriguez-Madoz
,
Teresa Ezponda
,
Rebeca Martínez-Turrilas
,
Amaia Vilas-Zornoza
,
David Lara-Astiaso
,
Daphné Dupéré-Richer
,
Joost H.A. Martens
,
Halima El-Omri
,
Ruba Y. Taha
,
Maria J. Calasanz
,
Bruno Paiva
,
Jesus San Miguel
,
Paul Flicek
,
Ivo Gut
,
Ari Melnick
,
Constantine S. Mitsiades
,
Jonathan D. Licht
,
Elias Campo
,
Hendrik G. Stunnenberg
,
Xabier Agirre
,
Felipe Prosper
,
and
Jose I. Martin-Subero
Genome Res.
September 2020
30
:
1217
-
1227
;
Published in Advance
August 20, 2020
,
doi:
10.1101/gr.265520.120
Abstract
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Research
:
The circular RNome of primary breast cancer
Marcel Smid
,
Saskia M. Wilting
,
Katharina Uhr
,
F. Germán Rodríguez-González
,
Vanja de Weerd
,
Wendy J.C. Prager-Van der Smissen
,
Michelle van der Vlugt-Daane
,
Anne van Galen
,
Serena Nik-Zainal
,
Adam Butler
,
Sancha Martin
,
Helen R. Davies
,
Johan Staaf
,
Marc J. van de Vijver
,
Andrea L. Richardson
,
Gaëten MacGrogan
,
Roberto Salgado
,
Gert G.G.M. van den Eynden
,
Colin A. Purdie
,
Alastair M. Thompson
,
Carlos Caldas
,
Paul N. Span
,
Fred C.G.J. Sweep
,
Peter T. Simpson
,
Sunil R. Lakhani
,
Steven Van Laere
,
Christine Desmedt
,
Angelo Paradiso
,
Jorunn Eyfjord
,
Annegien Broeks
,
Anne Vincent-Salomon
,
Andrew P. Futreal
,
Stian Knappskog
,
Tari King
,
Alain Viari
,
Anne-Lise Børresen-Dale
,
Hendrik G. Stunnenberg
,
Mike Stratton
,
John A. Foekens
,
Anieta M. Sieuwerts
,
and
John W.M. Martens
Genome Res.
March 2019
29
:
356
-
366
;
Published in Advance
January 28, 2019
,
doi:
10.1101/gr.238121.118
Abstract
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Research
:
Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers
Xabier Agirre
,
Giancarlo Castellano
,
Marien Pascual
,
Simon Heath
,
Marta Kulis
,
Victor Segura
,
Anke Bergmann
,
Anna Esteve
,
Angelika Merkel
,
Emanuele Raineri
,
Lidia Agueda
,
Julie Blanc
,
David Richardson
,
Laura Clarke
,
Avik Datta
,
Nuria Russiñol
,
Ana C. Queirós
,
Renée Beekman
,
Juan R. Rodríguez-Madoz
,
Edurne San José-Enériz
,
Fang Fang
,
Norma C. Gutiérrez
,
José M. García-Verdugo
,
Michael I. Robson
,
Eric C. Schirmer
,
Elisabeth Guruceaga
,
Joost H.A. Martens
,
Marta Gut
,
Maria J. Calasanz
,
Paul Flicek
,
Reiner Siebert
,
Elías Campo
,
Jesús F. San Miguel
,
Ari Melnick
,
Hendrik G. Stunnenberg
,
Ivo G. Gut
,
Felipe Prosper
,
and
José I. Martín-Subero
Genome Res.
April 2015
25
:
478
-
487
;
Published in Advance
February 2, 2015
,
doi:
10.1101/gr.180240.114
Abstract
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Method
:
Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
Arie B. Brinkman
,
Hongcang Gu
,
Stefanie J.J. Bartels
,
Yingying Zhang
,
Filomena Matarese
,
Femke Simmer
,
Hendrik Marks
,
Christoph Bock
,
Andreas Gnirke
,
Alexander Meissner
,
and
Hendrik G. Stunnenberg
Genome Res.
June 2012
22
:
1128
-
1138
;
Published in Advance
March 30, 2012
,
doi:
10.1101/gr.133728.111
Abstract
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Research
:
Coactivation of GR and NFKB alters the repertoire of their binding sites and target genes
Nagesha A.S. Rao
,
Melysia T. McCalman
,
Panagiotis Moulos
,
Kees-Jan Francoijs
,
Aristotelis Chatziioannou
,
Fragiskos N. Kolisis
,
Michael N. Alexis
,
Dimitra J. Mitsiou
,
and
Hendrik G. Stunnenberg
Genome Res.
September 2011
21
:
1404
-
1416
;
Published in Advance
July 12, 2011
,
doi:
10.1101/gr.118042.110
Abstract
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Research
:
Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis
Ozren Bogdanović
,
Steven W. Long
,
Simon J. van Heeringen
,
Arie B. Brinkman
,
Jose Luis Gómez-Skarmeta
,
Hendrik G. Stunnenberg
,
Peter L. Jones
,
and
Gert Jan C. Veenstra
Genome Res.
August 2011
21
:
1313
-
1327
;
Published in Advance
June 2, 2011
,
doi:
10.1101/gr.114843.110
Abstract
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Letter
:
High-resolution analysis of epigenetic changes associated with X inactivation
Hendrik Marks
,
Jennifer C. Chow
,
Sergei Denissov
,
Kees-Jan Françoijs
,
Neil Brockdorff
,
Edith Heard
,
and
Hendrik G. Stunnenberg
Genome Res.
August 2009
19
:
1361
-
1373
;
Published in Advance
July 6, 2009
,
doi:
10.1101/gr.092643.109
Abstract
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