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H Chen
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Displaying results 1-10 of
27
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Method
:
A unified analysis of atlas single-cell data
Hao Chen
,
Nam D. Nguyen
,
Matthew Ruffalo
,
and
Ziv Bar-Joseph
Genome Res.
May 2025
35
:
1219
-
1233
;
Published in Advance
February 18, 2025
,
doi:
10.1101/gr.279631.124
Abstract
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Resource
:
Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding
Kai Li
,
Melissa L. Smith
,
J. Chris Blazier
,
Kelli J. Kochan
,
Jonathan M.D. Wood
,
Kerstin Howe
,
Anne E. Kwitek
,
Melinda R. Dwinell
,
Hao Chen
,
Julia L. Ciosek
,
Patrick Masterson
,
Terence D. Murphy
,
Theodore S. Kalbfleisch
,
and
Peter A. Doris
Genome Res.
November 2024
34
:
2081
-
2093
;
Published in Advance
November 8, 2024
,
doi:
10.1101/gr.279292.124
Abstract
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Method
:
Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences
Chencheng Xu
,
Suying Bao
,
Ye Wang
,
Wenxing Li
,
Hao Chen
,
Yufeng Shen
,
Tao Jiang
,
and
Chaolin Zhang
Genome Res.
July 2024
34
:
1052
-
1065
;
Published in Advance
July 26, 2024
,
doi:
10.1101/gr.279044.124
Abstract
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Resource
:
An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants
Can Yuan
,
Lijing Tang
,
Thomas Lopdell
,
Vyacheslav A. Petrov
,
Claire Oget-Ebrad
,
Gabriel Costa Monteiro Moreira
,
José Luis Gualdrón Duarte
,
Arnaud Sartelet
,
Zhangrui Cheng
,
Mazdak Salavati
,
D. Claire Wathes
,
Mark A. Crowe
,
GplusE Consortium
,
Wouter Coppieters
,
Mathew Littlejohn
,
Carole Charlier
,
Tom Druet
,
Michel Georges
,
and
Haruko Takeda
Genome Res.
October 2023
33
:
1848
-
1864
;
Published in Advance
September 26, 2023
,
doi:
10.1101/gr.277947.123
Abstract
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Resource
:
The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation
Zhengcao Li
,
Xiaohong Liu
,
Chen Wang
,
Zhenyang Li
,
Bo Jiang
,
Ruifeng Zhang
,
Lu Tong
,
Youping Qu
,
Sheng He
,
Haifan Chen
,
Yafei Mao
,
Qingnan Li
,
Torsten Pook
,
Yu Wu
,
Yanjun Zan
,
Hui Zhang
,
Lu Li
,
Keying Wen
,
and
Yaosheng Chen
Genome Res.
October 2023
33
:
1833
-
1847
;
Published in Advance
November 1, 2023
,
doi:
10.1101/gr.277638.122
Abstract
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Method
:
A transcriptome-based single-cell biological age model and resource for tissue-specific aging measures
Shulin Mao
,
Jiayu Su
,
Longteng Wang
,
Xiaochen Bo
,
Cheng Li
,
and
Hebing Chen
Genome Res.
August 2023
33
:
1381
-
1394
;
Published in Advance
July 31, 2023
,
doi:
10.1101/gr.277491.122
Abstract
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Resource
:
dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development
Xin Huang
,
Xiaohan Tang
,
Xuemei Bai
,
Honglei Li
,
Huan Tao
,
Junting Wang
,
Yaru Li
,
Yu Sun
,
Yang Zheng
,
Xiang Xu
,
Longteng Wang
,
Yang Ding
,
Meisong Lu
,
Pingkun Zhou
,
Xiaochen Bo
,
Hao Li
,
and
Hebing Chen
Genome Res.
August 2022
32
:
1612
-
1625
;
Published in Advance
August 17, 2022
,
doi:
10.1101/gr.276744.122
Abstract
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Research
:
H3K36 dimethylation shapes the epigenetic interaction landscape by directing repressive chromatin modifications in embryonic stem cells
Haifen Chen
,
Bo Hu
,
Cynthia Horth
,
Eric Bareke
,
Phillip Rosenbaum
,
Sin Young Kwon
,
Jacinthe Sirois
,
Daniel N. Weinberg
,
Faith M. Robison
,
Benjamin A. Garcia
,
Chao Lu
,
William A. Pastor
,
and
Jacek Majewski
Genome Res.
May 2022
32
:
825
-
837
;
Published in Advance
April 8, 2022
,
doi:
10.1101/gr.276383.121
Abstract
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Research
:
Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling
Lu Liu
,
He Chen
,
Cheng Sun
,
Jianyun Zhang
,
Juncheng Wang
,
Meijie Du
,
Jie Li
,
Lin Di
,
Jie Shen
,
Shuang Geng
,
Yuhong Pang
,
Yingying Luo
,
Chen Wu
,
Yusi Fu
,
Zhe Zheng
,
Jianbin Wang
,
and
Yanyi Huang
Genome Res.
January 2022
32
:
44
-
54
;
Published in Advance
December 28, 2021
,
doi:
10.1101/gr.275453.121
Abstract
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Research
:
Trajectory mapping of the early
Drosophila
germline reveals controls of zygotic activation and sex differentiation
Yi-Ru Li
,
Hsiao Wen Lai
,
Hsiao Han Huang
,
Hsing-Chun Chen
,
Sebastian D. Fugmann
,
and
Shu Yuan Yang
Genome Res.
June 2021
31
:
1011
-
1023
;
Published in Advance
April 15, 2021
,
doi:
10.1101/gr.271148.120
Abstract
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Single-cell gene signature scoring
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Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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