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Guo-Cheng Yuan
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4
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Method
:
QuadST identifies cell–cell interaction–changed genes in spatially resolved transcriptomics data
Xiaoyu Song
,
Yuqing Shang
,
Michelle E. Ehrlich
,
Panos Roussos
,
Guo-Cheng Yuan
,
and
Pei Wang
Genome Res.
August 2025
35
:
1821
-
1831
;
Published in Advance
June 23, 2025
,
doi:
10.1101/gr.279859.124
Abstract
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Perspective
:
Advances in spatial transcriptomic data analysis
Ruben Dries
,
Jiaji Chen
,
Natalie del Rossi
,
Mohammed Muzamil Khan
,
Adriana Sistig
,
and
Guo-Cheng Yuan
Genome Res.
October 2021
31
:
1706
-
1718
;
doi:
10.1101/gr.275224.121
Abstract
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Research
:
A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA
Shiyan Wang
,
Jiahuan Chen
,
Sara P. Garcia
,
Xiaodong Liang
,
Fang Zhang
,
Pengyi Yan
,
Huijing Yu
,
Weiting Wei
,
Zixuan Li
,
Jingfang Wang
,
Huangying Le
,
Zeguang Han
,
Xusheng Luo
,
Daniel S. Day
,
Sean M. Stevens
,
Yan Zhang
,
Peter J. Park
,
Zhi-jie Liu
,
Kun Sun
,
Guo-cheng Yuan
,
William T. Pu
,
and
Bing Zhang
Genome Res.
February 2019
29
:
193
-
207
;
Published in Advance
January 22, 2019
,
doi:
10.1101/gr.239053.118
Abstract
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Resource
:
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
Pablo Meyer
,
Geoffrey Siwo
,
Danny Zeevi
,
Eilon Sharon
,
Raquel Norel
,
DREAM6 Promoter Prediction Consortium
,
Eran Segal
,
and
Gustavo Stolovitzky
Genome Res.
November 2013
23
:
1928
-
1937
;
Published in Advance
August 15, 2013
,
doi:
10.1101/gr.157420.113
Abstract
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