Searching journal content for Guillaume Bourque in author.

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  1. Method: Read-level genotyping of short tandem repeats using long reads and single-nucleotide variation with STRkit
    • David R. Lougheed,
    • Tomi Pastinen,
    • and Guillaume Bourque
    Genome Res. March 2026 36: 578-588; Published in Advance January 15, 2026, doi:10.1101/gr.280766.125
  2. Erratum: Erratum: Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
    • Cristian Groza,
    • Bing Ge,
    • Warren A. Cheung,
    • Tomi Pastinen,
    • and Guillaume Bourque
    Genome Res. March 2026 36: 660; doi:10.1101/gr.281963.126
    OPEN ACCESS ARTICLE
  3. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  4. Research: Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
    • Cristian Groza,
    • Bing Ge,
    • Warren A. Cheung,
    • Tomi Pastinen,
    • and Guillaume Bourque
    Genome Res. April 2025 35: 644-652; Published in Advance March 20, 2025, doi:10.1101/gr.279240.124
  5. Research: Gaps and complex structurally variant loci in phased genome assemblies
    • David Porubsky,
    • Mitchell R. Vollger,
    • William T. Harvey,
    • Allison N. Rozanski,
    • Peter Ebert,
    • Glenn Hickey,
    • Patrick Hasenfeld,
    • Ashley D. Sanders,
    • Catherine Stober,
    • Human Pangenome Reference Consortium,
    • Jan O. Korbel,
    • Benedict Paten,
    • Tobias Marschall,
    • and Evan E. Eichler
    Genome Res. April 2023 33: 496-510; Published in Advance May 10, 2023, doi:10.1101/gr.277334.122
    OPEN ACCESS ARTICLE
  6. Method: Ultrafast functional profiling of RNA-seq data for nonmodel organisms
    • Peng Liu,
    • Jessica Ewald,
    • Jose Hector Galvez,
    • Jessica Head,
    • Doug Crump,
    • Guillaume Bourque,
    • Niladri Basu,
    • and Jianguo Xia
    Genome Res. April 2021 31: 713-720; Published in Advance March 17, 2021, doi:10.1101/gr.269894.120
    OPEN ACCESS ARTICLE
  7. Research: Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
    • Håvard Aanes,
    • Cecilia L. Winata,
    • Chi Ho Lin,
    • Jieqi P. Chen,
    • Kandhadayar G. Srinivasan,
    • Serene G.P. Lee,
    • Adrian Y.M. Lim,
    • Hajira Shreen Hajan,
    • Philippe Collas,
    • Guillaume Bourque,
    • Zhiyuan Gong,
    • Vladimir Korzh,
    • Peter Aleström,
    • and Sinnakaruppan Mathavan
    Genome Res. August 2011 21: 1328-1338; Published in Advance May 9, 2011, doi:10.1101/gr.116012.110
    OPEN ACCESS ARTICLE
  8. Research: Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes
    • Axel M. Hillmer,
    • Fei Yao,
    • Koichiro Inaki,
    • Wah Heng Lee,
    • Pramila N. Ariyaratne,
    • Audrey S.M. Teo,
    • Xing Yi Woo,
    • Zhenshui Zhang,
    • Hao Zhao,
    • Leena Ukil,
    • Jieqi P. Chen,
    • Feng Zhu,
    • Jimmy B.Y. So,
    • Manuel Salto-Tellez,
    • Wan Ting Poh,
    • Kelson F.B. Zawack,
    • Niranjan Nagarajan,
    • Song Gao,
    • Guoliang Li,
    • Vikrant Kumar,
    • Hui Ping J. Lim,
    • Yee Yen Sia,
    • Chee Seng Chan,
    • See Ting Leong,
    • Say Chuan Neo,
    • Poh Sum D. Choi,
    • Hervé Thoreau,
    • Patrick B.O. Tan,
    • Atif Shahab,
    • Xiaoan Ruan,
    • Jonas Bergh,
    • Per Hall,
    • Valère Cacheux-Rataboul,
    • Chia-Lin Wei,
    • Khay Guan Yeoh,
    • Wing-Kin Sung,
    • Guillaume Bourque,
    • Edison T. Liu,
    • and Yijun Ruan
    Genome Res. May 2011 21: 665-675; Published in Advance April 5, 2011, doi:10.1101/gr.113555.110
    OPEN ACCESS ARTICLE
  9. Research: Transcriptional consequences of genomic structural aberrations in breast cancer
    • Koichiro Inaki,
    • Axel M. Hillmer,
    • Leena Ukil,
    • Fei Yao,
    • Xing Yi Woo,
    • Leah A. Vardy,
    • Kelson Folkvard Braaten Zawack,
    • Charlie Wah Heng Lee,
    • Pramila Nuwantha Ariyaratne,
    • Yang Sun Chan,
    • Kartiki Vasant Desai,
    • Jonas Bergh,
    • Per Hall,
    • Thomas Choudary Putti,
    • Wai Loon Ong,
    • Atif Shahab,
    • Valere Cacheux-Rataboul,
    • Radha Krishna Murthy Karuturi,
    • Wing-Kin Sung,
    • Xiaoan Ruan,
    • Guillaume Bourque,
    • Yijun Ruan,
    • and Edison T. Liu
    Genome Res. May 2011 21: 676-687; Published in Advance April 5, 2011, doi:10.1101/gr.113225.110
    OPEN ACCESS ARTICLE
  10. Resource: Recovering genome rearrangements in the mammalian phylogeny
    • Hao Zhao and
    • Guillaume Bourque
    Genome Res. May 2009 19: 934-942; doi:10.1101/gr.086009.108
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