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Gregory M. Cooper
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Displaying results 1-10 of
18
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Research
:
Long-read genome sequencing and variant reanalysis increase diagnostic yield in neurodevelopmental disorders
Susan M. Hiatt
,
James M.J. Lawlor
,
Lori H. Handley
,
Donald R. Latner
,
Zachary T. Bonnstetter
,
Candice R. Finnila
,
Michelle L. Thompson
,
Lori Beth Boston
,
Melissa Williams
,
Ivan Rodriguez Nunez
,
Jerry Jenkins
,
Whitley V. Kelley
,
E. Martina Bebin
,
Michael A. Lopez
,
Anna C.E. Hurst
,
Bruce R. Korf
,
Jeremy Schmutz
,
Jane Grimwood
,
and
Gregory M. Cooper
Genome Res.
November 2024
34
:
1747
-
1762
;
Published in Advance
September 19, 2024
,
doi:
10.1101/gr.279227.124
Abstract
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Resource
:
Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs
Ashlyn G. Anderson
,
Belle A. Moyers
,
Jacob M. Loupe
,
Ivan Rodriguez-Nunez
,
Stephanie A. Felker
,
James M.J. Lawlor
,
William E. Bunney
,
Blynn G. Bunney
,
Preston M. Cartagena
,
Adolfo Sequeira
,
Stanley J. Watson
,
Huda Akil
,
Eric M. Mendenhall
,
Gregory M. Cooper
,
and
Richard M. Myers
Genome Res.
August 2024
34
:
1224
-
1234
;
Published in Advance
August 16, 2024
,
doi:
10.1101/gr.278601.123
Abstract
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Method
:
Probabilistic association of differentially expressed genes with
cis
-regulatory elements
Brian S. Roberts
,
Ashlyn G. Anderson
,
E. Christopher Partridge
,
Gregory M. Cooper
,
and
Richard M. Myers
Genome Res.
April 2024
34
:
620
-
632
;
Published in Advance
April 17, 2024
,
doi:
10.1101/gr.278598.123
Abstract
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Research
:
Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands
Brian S. Roberts
,
E. Christopher Partridge
,
Bryan A. Moyers
,
Vikram Agarwal
,
Kimberly M. Newberry
,
Beth K. Martin
,
Jay Shendure
,
Richard M. Myers
,
and
Gregory M. Cooper
Genome Res.
May 2021
31
:
866
-
876
;
Published in Advance
April 20, 2021
,
doi:
10.1101/gr.270751.120
Abstract
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Corrigendum
:
Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity
Fumitaka Inoue
,
Martin Kircher
,
Beth Martin
,
Gregory M. Cooper
,
Daniela M. Witten
,
Michael T. McManus
,
Nadav Ahituv
,
and
Jay Shendure
Genome Res.
May 2018
28
:
766.3
;
doi:
10.1101/gr.237321.118
Extract
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Resource
:
A genome-wide interactome of DNA-associated proteins in the human liver
Ryne C. Ramaker
,
Daniel Savic
,
Andrew A. Hardigan
,
Kimberly Newberry
,
Gregory M. Cooper
,
Richard M. Myers
,
and
Sara J. Cooper
Genome Res.
November 2017
27
:
1950
-
1960
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.222083.117
Abstract
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Research
:
A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity
Fumitaka Inoue
,
Martin Kircher
,
Beth Martin
,
Gregory M. Cooper
,
Daniela M. Witten
,
Michael T. McManus
,
Nadav Ahituv
,
and
Jay Shendure
Genome Res.
January 2017
27
:
38
-
52
;
Published in Advance
November 9, 2016
,
doi:
10.1101/gr.212092.116
Abstract
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Research
:
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
Daniel Savic
,
Brian S. Roberts
,
Julia B. Carleton
,
E. Christopher Partridge
,
Michael A. White
,
Barak A. Cohen
,
Gregory M. Cooper
,
Jason Gertz
,
and
Richard M. Myers
Genome Res.
December 2015
25
:
1791
-
1800
;
Published in Advance
October 20, 2015
,
doi:
10.1101/gr.191593.115
Abstract
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Perspective
:
Parlez-vous VUS?
Gregory M. Cooper
Genome Res.
October 2015
25
:
1423
-
1426
;
doi:
10.1101/gr.190116.115
Abstract
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Letter
:
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
David L. Goode
,
Gregory M. Cooper
,
Jeremy Schmutz
,
Mark Dickson
,
Eidelyn Gonzales
,
Ming Tsai
,
Kalpana Karra
,
Eugene Davydov
,
Serafim Batzoglou
,
Richard M. Myers
,
and
Arend Sidow
Genome Res.
March 2010
20
:
301
-
310
;
Published in Advance
January 12, 2010
,
doi:
10.1101/gr.102210.109
Abstract
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