Searching journal content for Ghia M. Euskirchen in author.

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  1. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  2. Resource: Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
    • Vincent M. Bruno,
    • Zhong Wang,
    • Sadie L. Marjani,
    • Ghia M. Euskirchen,
    • Jeffrey Martin,
    • Gavin Sherlock,
    • and Michael Snyder
    Genome Res. October 2010 20: 1451-1458; Published in Advance September 1, 2010, doi:10.1101/gr.109553.110
    OPEN ACCESS ARTICLE
  3. LETTER: Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding
    • A. Gordon Robertson,
    • Mikhail Bilenky,
    • Angela Tam,
    • Yongjun Zhao,
    • Thomas Zeng,
    • Nina Thiessen,
    • Timothee Cezard,
    • Anthony P. Fejes,
    • Elizabeth D. Wederell,
    • Rebecca Cullum,
    • Ghia Euskirchen,
    • Martin Krzywinski,
    • Inanc Birol,
    • Michael Snyder,
    • Pamela A. Hoodless,
    • Martin Hirst,
    • Marco A. Marra,
    • and Steven J.M. Jones
    Genome Res. December 2008 18: 1906-1917; Published in Advance September 11, 2008, doi:10.1101/gr.078519.108
    OPEN ACCESS ARTICLE
  4. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  5. Methods: Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
    • Ghia M. Euskirchen,
    • Joel S. Rozowsky,
    • Chia-Lin Wei,
    • Wah Heng Lee,
    • Zhengdong D. Zhang,
    • Stephen Hartman,
    • Olof Emanuelsson,
    • Viktor Stolc,
    • Sherman Weissman,
    • Mark B. Gerstein,
    • Yijun Ruan,
    • and Michael Snyder
    Genome Res. June 2007 17: 898-909; doi:10.1101/gr.5583007
    OPEN ACCESS ARTICLE
  6. Methods: Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE)
    • Akshay A. Bhinge,
    • Jonghwan Kim,
    • Ghia M. Euskirchen,
    • Michael Snyder,
    • and Vishwanath R. Iyer
    Genome Res. June 2007 17: 910-916; doi:10.1101/gr.5574907
    OPEN ACCESS ARTICLE
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