Searching journal content for Gerard G. Bouffard in author.

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  1. Research: Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity
    • Cory A. Weller,
    • Ilya Andreev,
    • Michael J. Chambers,
    • Morgan Park,
    • NISC Comparative Sequencing Program,
    • Joshua S. Bloom,
    • and Meru J. Sadhu
    Genome Res. May 2023 33: 729-740; Published in Advance May 1, 2023, doi:10.1101/gr.277515.122
  2. Research: Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
    • Tongwu Zhang,
    • Jiyeon Choi,
    • Michael A. Kovacs,
    • Jianxin Shi,
    • Mai Xu,
    • NISC Comparative Sequencing Program,
    • Melanoma Meta-Analysis Consortium,
    • Alisa M. Goldstein,
    • Adam J. Trower,
    • D. Timothy Bishop,
    • Mark M. Iles,
    • David L. Duffy,
    • Stuart MacGregor,
    • Laufey T. Amundadottir,
    • Matthew H. Law,
    • Stacie K. Loftus,
    • William J. Pavan,
    • and Kevin M. Brown
    Genome Res. November 2018 28: 1621-1635; Published in Advance October 17, 2018, doi:10.1101/gr.233304.117
  3. Resource: The completion of the Mammalian Gene Collection (MGC)
    • The MGC Project Team,
    • Gary Temple,
    • Daniela S. Gerhard,
    • Rebekah Rasooly,
    • Elise A. Feingold,
    • Peter J. Good,
    • Cristen Robinson,
    • Allison Mandich,
    • Jeffrey G. Derge,
    • Jeanne Lewis,
    • Debonny Shoaf,
    • Francis S. Collins,
    • Wonhee Jang,
    • Lukas Wagner,
    • Carolyn M. Shenmen,
    • Leonie Misquitta,
    • Carl F. Schaefer,
    • Kenneth H. Buetow,
    • Tom I. Bonner,
    • Linda Yankie,
    • Ming Ward,
    • Lon Phan,
    • Alex Astashyn,
    • Garth Brown,
    • Catherine Farrell,
    • Jennifer Hart,
    • Melissa Landrum,
    • Bonnie L. Maidak,
    • Michael Murphy,
    • Terence Murphy,
    • Bhanu Rajput,
    • Lillian Riddick,
    • David Webb,
    • Janet Weber,
    • Wendy Wu,
    • Kim D. Pruitt,
    • Donna Maglott,
    • Adam Siepel,
    • Brona Brejova,
    • Mark Diekhans,
    • Rachel Harte,
    • Robert Baertsch,
    • Jim Kent,
    • David Haussler,
    • Michael Brent,
    • Laura Langton,
    • Charles L.G. Comstock,
    • Michael Stevens,
    • Chaochun Wei,
    • Marijke J. van Baren,
    • Kourosh Salehi-Ashtiani,
    • Ryan R. Murray,
    • Lila Ghamsari,
    • Elizabeth Mello,
    • Chenwei Lin,
    • Christa Pennacchio,
    • Kirsten Schreiber,
    • Nicole Shapiro,
    • Amber Marsh,
    • Elizabeth Pardes,
    • Troy Moore,
    • Anita Lebeau,
    • Mike Muratet,
    • Blake Simmons,
    • David Kloske,
    • Stephanie Sieja,
    • James Hudson,
    • Praveen Sethupathy,
    • Michael Brownstein,
    • Narayan Bhat,
    • Joseph Lazar,
    • Howard Jacob,
    • Chris E. Gruber,
    • Mark R. Smith,
    • John McPherson,
    • Angela M. Garcia,
    • Preethi H. Gunaratne,
    • Jiaqian Wu,
    • Donna Muzny,
    • Richard A. Gibbs,
    • Alice C. Young,
    • Gerard G. Bouffard,
    • Robert W. Blakesley,
    • Jim Mullikin,
    • Eric D. Green,
    • Mark C. Dickson,
    • Alex C. Rodriguez,
    • Jane Grimwood,
    • Jeremy Schmutz,
    • Richard M. Myers,
    • Martin Hirst,
    • Thomas Zeng,
    • Kane Tse,
    • Michelle Moksa,
    • Merinda Deng,
    • Kevin Ma,
    • Diana Mah,
    • Johnson Pang,
    • Greg Taylor,
    • Eric Chuah,
    • Athena Deng,
    • Keith Fichter,
    • Anne Go,
    • Stephanie Lee,
    • Jing Wang,
    • Malachi Griffith,
    • Ryan Morin,
    • Richard A. Moore,
    • Michael Mayo,
    • Sarah Munro,
    • Susan Wagner,
    • Steven J.M. Jones,
    • Robert A. Holt,
    • Marco A. Marra,
    • Sun Lu,
    • Shuwei Yang,
    • James Hartigan,
    • Marcus Graf,
    • Ralf Wagner,
    • Stanley Letovksy,
    • Jacqueline C. Pulido,
    • Keith Robison,
    • Dominic Esposito,
    • James Hartley,
    • Vanessa E. Wall,
    • Ralph F. Hopkins,
    • Osamu Ohara,
    • and Stefan Wiemann
    Genome Res. December 2009 19: 2324-2333; Published in Advance September 18, 2009, doi:10.1101/gr.095976.109
  4. Resource: The ClinSeq Project: Piloting large-scale genome sequencing for research in genomic medicine
    • Leslie G. Biesecker,
    • James C. Mullikin,
    • Flavia M. Facio,
    • Clesson Turner,
    • Praveen F. Cherukuri,
    • Robert W. Blakesley,
    • Gerard G. Bouffard,
    • Peter S. Chines,
    • Pedro Cruz,
    • Nancy F. Hansen,
    • Jamie K. Teer,
    • Baishali Maskeri,
    • Alice C. Young,
    • NISC Comparative Sequencing Program,
    • Teri A. Manolio,
    • Alexander F. Wilson,
    • Toren Finkel,
    • Paul Hwang,
    • Andrew Arai,
    • Alan T. Remaley,
    • Vandana Sachdev,
    • Robert Shamburek,
    • Richard O. Cannon,
    • and Eric D. Green
    Genome Res. September 2009 19: 1665-1674; Published in Advance July 14, 2009, doi:10.1101/gr.092841.109
  5. LETTER: A diversity profile of the human skin microbiota
    • Elizabeth A. Grice,
    • Heidi H. Kong,
    • Gabriel Renaud,
    • Alice C. Young,
    • Gerard G. Bouffard,
    • Robert W. Blakesley,
    • Tyra G. Wolfsberg,
    • Maria L. Turner,
    • and Julia A. Segre
    Genome Res. July 2008 18: 1043-1050; Published in Advance May 23, 2008, doi:10.1101/gr.075549.107
    OPEN ACCESS ARTICLE
  6. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  7. RESOURCE: Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling
    • Ryan D. Morin,
    • Elbert Chang,
    • Anca Petrescu,
    • Nancy Liao,
    • Malachi Griffith,
    • Robert Kirkpatrick,
    • Yaron S. Butterfield,
    • Alice C. Young,
    • Jeffrey Stott,
    • Sarah Barber,
    • Ryan Babakaiff,
    • Mark C. Dickson,
    • Corey Matsuo,
    • David Wong,
    • George S. Yang,
    • Duane E. Smailus,
    • Keith D. Wetherby,
    • Peggy N. Kwong,
    • Jane Grimwood,
    • Charles P. Brinkley III,
    • Mabel Brown-John,
    • Natalie D. Reddix-Dugue,
    • Michael Mayo,
    • Jeremy Schmutz,
    • Jaclyn Beland,
    • Morgan Park,
    • Susan Gibson,
    • Teika Olson,
    • Gerard G. Bouffard,
    • Miranda Tsai,
    • Ruth Featherstone,
    • Steve Chand,
    • Asim S. Siddiqui,
    • Wonhee Jang,
    • Ed Lee,
    • Steven L. Klein,
    • Robert W. Blakesley,
    • Barry R. Zeeberg,
    • Sudarshan Narasimhan,
    • John N. Weinstein,
    • Christa Prange Pennacchio,
    • Richard M. Myers,
    • Eric D. Green,
    • Lukas Wagner,
    • Daniela S. Gerhard,
    • Marco A. Marra,
    • Steven J.M. Jones,
    • and Robert A. Holt
    Genome Res. June 2006 16: 796-803; Published in Advance May 3, 2006, doi:10.1101/gr.4871006
  8. LETTER: An intermediate grade of finished genomic sequence suitable for comparative analyses
    • Robert W. Blakesley,
    • Nancy F. Hansen,
    • James C. Mullikin,
    • Pamela J. Thomas,
    • Jennifer C. McDowell,
    • Baishali Maskeri,
    • Alice C. Young,
    • Beatrice Benjamin,
    • Shelise Y. Brooks,
    • Bradley I. Coleman,
    • Jyoti Gupta,
    • Shi-Ling Ho,
    • Eric M. Karlins,
    • Quino L. Maduro,
    • Sirintorn Stantripop,
    • Cyrus Tsurgeon,
    • Jennifer L. Vogt,
    • Michelle A. Walker,
    • Catherine A. Masiello,
    • Xiaobin Guan,
    • NISC Comparative Sequencing Program,
    • Gerard G. Bouffard,
    • and Eric D. Green
    Genome Res. November 2004 14: 2235-2244; Published in Advance October 12, 2004, doi:10.1101/gr.2648404
  9. LETTER: Pericentromeric Duplications in the Laboratory Mouse
    • James W. Thomas,
    • Mary G. Schueler,
    • Tyrone J. Summers,
    • Robert W. Blakesley,
    • Jennifer C. McDowell,
    • Pamela J. Thomas,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Shih-Queen Lee-Lin,
    • Jeffrey W. Touchman,
    • Gerard G. Bouffard,
    • Stephen M. Beckstrom-Sternberg,
    • NISC Comparative Sequencing Program,
    • and Eric D. Green
    Genome Res. January 1, 2003 13: 55-63; Published in Advance December 30, 2002, doi:10.1101/gr.791403
  10. REPORT: Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome
    • Udaya DeSilva,
    • Laura Elnitski,
    • Jacquelyn R. Idol,
    • Johannah L. Doyle,
    • Weiniu Gan,
    • James W. Thomas,
    • Scott Schwartz,
    • Nicole L. Dietrich,
    • Stephen M. Beckstrom-Sternberg,
    • Jennifer C. McDowell,
    • Robert W. Blakesley,
    • Gerard G. Bouffard,
    • Pamela J. Thomas,
    • Jeffrey W. Touchman,
    • Webb Miller,
    • and Eric D. Green
    Genome Res. January 1, 2002 12: 3-15; doi:10.1101/gr.214802
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