Searching journal content for Francesca Chiaromonte in author.

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  1. Method: Accurate sequencing of DNA motifs able to form alternative (non-B) structures
    • Matthias H. Weissensteiner,
    • Marzia A. Cremona,
    • Wilfried M. Guiblet,
    • Nicholas Stoler,
    • Robert S. Harris,
    • Monika Cechova,
    • Kristin A. Eckert,
    • Francesca Chiaromonte,
    • Yi-Fei Huang,
    • and Kateryna D. Makova
    Genome Res. July 11, 2023 ; Published in Advance July 11, 2023, doi:10.1101/gr.277490.122
    OPEN ACCESS ARTICLE
  2. Research: Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
    • Wilfried M. Guiblet,
    • Michael DeGiorgio,
    • Xiaoheng Cheng,
    • Francesca Chiaromonte,
    • Kristin A. Eckert,
    • Yi-Fei Huang,
    • and Kateryna D. Makova
    Genome Res. July 2021 31: 1136-1149; Published in Advance June 29, 2021, doi:10.1101/gr.269589.120
    OPEN ACCESS ARTICLE
  3. Research: Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate
    • Wilfried M. Guiblet,
    • Marzia A. Cremona,
    • Monika Cechova,
    • Robert S. Harris,
    • Iva Kejnovská,
    • Eduard Kejnovsky,
    • Kristin Eckert,
    • Francesca Chiaromonte,
    • and Kateryna D. Makova
    Genome Res. December 2018 28: 1767-1778; Published in Advance November 6, 2018, doi:10.1101/gr.241257.118
    OPEN ACCESS ARTICLE
  4. Corrigendum: Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
    • Arkarachai Fungtammasan,
    • Erin Walsh,
    • Francesca Chiaromonte,
    • Kristin A. Eckert,
    • and Kateryna D. Makova
    Genome Res. October 2016 26: 1451; doi:10.1101/gr.214460.116
    OPEN ACCESS ARTICLE
  5. Research: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?
    • Arkarachai Fungtammasan,
    • Erin Walsh,
    • Francesca Chiaromonte,
    • Kristin A. Eckert,
    • and Kateryna D. Makova
    Genome Res. June 2012 22: 993-1005; Published in Advance March 28, 2012, doi:10.1101/gr.134395.111
  6. Research: A matter of life or death: How microsatellites emerge in and vanish from the human genome
    • Yogeshwar D. Kelkar,
    • Kristin A. Eckert,
    • Francesca Chiaromonte,
    • and Kateryna D. Makova
    Genome Res. December 2011 21: 2038-2048; Published in Advance October 12, 2011, doi:10.1101/gr.122937.111
  7. Research: Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
    • Weisheng Wu,
    • Yong Cheng,
    • Cheryl A. Keller,
    • Jason Ernst,
    • Swathi Ashok Kumar,
    • Tejaswini Mishra,
    • Christapher Morrissey,
    • Christine M. Dorman,
    • Kuan-Bei Chen,
    • Daniela Drautz,
    • Belinda Giardine,
    • Yoichiro Shibata,
    • Lingyun Song,
    • Max Pimkin,
    • Gregory E. Crawford,
    • Terrence S. Furey,
    • Manolis Kellis,
    • Webb Miller,
    • James Taylor,
    • Stephan C. Schuster,
    • Yu Zhang,
    • Francesca Chiaromonte,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. October 2011 21: 1659-1671; Published in Advance July 27, 2011, doi:10.1101/gr.125088.111
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  8. Article: Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
    • Yong Cheng,
    • Weisheng Wu,
    • Swathi Ashok Kumar,
    • Duonan Yu,
    • Wulan Deng,
    • Tamara Tripic,
    • David C. King,
    • Kuan-Bei Chen,
    • Ying Zhang,
    • Daniela Drautz,
    • Belinda Giardine,
    • Stephan C. Schuster,
    • Webb Miller,
    • Francesca Chiaromonte,
    • Yu Zhang,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2009 19: 2172-2184; Published in Advance November 3, 2009, doi:10.1101/gr.098921.109
    OPEN ACCESS ARTICLE
  9. Resource: Windshield splatter analysis with the Galaxy metagenomic pipeline
    • Sergei Kosakovsky Pond,
    • Samir Wadhawan,
    • Francesca Chiaromonte,
    • Guruprasad Ananda,
    • Wen-Yu Chung,
    • James Taylor,
    • Anton Nekrutenko,
    • and The Galaxy Team
    Genome Res. November 2009 19: 2144-2153; Published in Advance October 9, 2009, doi:10.1101/gr.094508.109
    OPEN ACCESS ARTICLE
  10. Letter: Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions
    • Erika M. Kvikstad,
    • Francesca Chiaromonte,
    • and Kateryna D. Makova
    Genome Res. July 2009 19: 1153-1164; Published in Advance June 5, 2009, doi:10.1101/gr.088922.108
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