Searching journal content for Erik van Nimwegen in author.

Displaying results 1-8 of 8
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  1. Method: Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs
    • Severin Berger,
    • Mikhail Pachkov,
    • Phil Arnold,
    • Saeed Omidi,
    • Nicholas Kelley,
    • Silvia Salatino,
    • and Erik van Nimwegen
    Genome Res. July 2019 29: 1164-1177; Published in Advance May 28, 2019, doi:10.1101/gr.239319.118
    OPEN ACCESS ARTICLE
  2. Research: A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development
    • Claus Schertel,
    • Monica Albarca,
    • Claudia Rockel-Bauer,
    • Nicholas W. Kelley,
    • Johannes Bischof,
    • Korneel Hens,
    • Erik van Nimwegen,
    • Konrad Basler,
    • and Bart Deplancke
    Genome Res. April 2015 25: 514-523; Published in Advance January 7, 2015, doi:10.1101/gr.181305.114
  3. Method: ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
    • Piotr J. Balwierz,
    • Mikhail Pachkov,
    • Phil Arnold,
    • Andreas J. Gruber,
    • Mihaela Zavolan,
    • and Erik van Nimwegen
    Genome Res. May 2014 24: 869-884; Published in Advance February 10, 2014, doi:10.1101/gr.169508.113
    OPEN ACCESS ARTICLE
  4. Research: Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
    • Phil Arnold,
    • Anne Schöler,
    • Mikhail Pachkov,
    • Piotr J. Balwierz,
    • Helle Jørgensen,
    • Michael B. Stadler,
    • Erik van Nimwegen,
    • and Dirk Schübeler
    Genome Res. January 2013 23: 60-73; Published in Advance September 10, 2012, doi:10.1101/gr.142661.112
    OPEN ACCESS ARTICLE
  5. Letter: The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion
    • Angela Taddei,
    • Griet Van Houwe,
    • Shigeki Nagai,
    • Ionas Erb,
    • Erik van Nimwegen,
    • and Susan M. Gasser
    Genome Res. April 2009 19: 611-625; Published in Advance January 29, 2009, doi:10.1101/gr.083881.108
  6. LETTER: Universal patterns of purifying selection at noncoding positions in bacteria
    • Nacho Molina and
    • Erik van Nimwegen
    Genome Res. January 2008 18: 148-160; Published in Advance November 21, 2007, doi:10.1101/gr.6759507
  7. LETTER: Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence Attributes
    • Edward Yang,
    • Erik van Nimwegen,
    • Mihaela Zavolan,
    • Nikolaus Rajewsky,
    • Mark Schroeder,
    • Marcelo Magnasco,
    • and James E. Darnell, Jr
    Genome Res. August 2003 13: 1863-1872; doi:10.1101/gr.1272403
  8. LETTER: Splice Variation in Mouse Full-Length cDNAs Identified by Mapping to the Mouse Genome
    • Mihaela Zavolan,
    • Erik van Nimwegen,
    • and Terry Gaasterland
    Genome Res. September 1, 2002 12: 1377-1385; doi:10.1101/gr.191702
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