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Eric S Lander
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16
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Research
:
Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution
Hoon Kim
,
Siyuan Zheng
,
Seyed S. Amini
,
Selene M. Virk
,
Tom Mikkelsen
,
Daniel J. Brat
,
Jonna Grimsby
,
Carrie Sougnez
,
Florian Muller
,
Jian Hu
,
Andrew E. Sloan
,
Mark L. Cohen
,
Erwin G. Van Meir
,
Lisa Scarpace
,
Peter W. Laird
,
John N. Weinstein
,
Eric S. Lander
,
Stacey Gabriel
,
Gad Getz
,
Matthew Meyerson
,
Lynda Chin
,
Jill S. Barnholtz-Sloan
,
and
Roel G.W. Verhaak
Genome Res.
March 2015
25
:
316
-
327
;
Published in Advance
February 3, 2015
,
doi:
10.1101/gr.180612.114
Abstract
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Research
:
Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
Yotam Drier
,
Michael S. Lawrence
,
Scott L. Carter
,
Chip Stewart
,
Stacey B. Gabriel
,
Eric S. Lander
,
Matthew Meyerson
,
Rameen Beroukhim
,
and
Gad Getz
Genome Res.
February 2013
23
:
228
-
235
;
Published in Advance
November 2, 2012
,
doi:
10.1101/gr.141382.112
Abstract
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Research
:
Integrative analysis of the melanoma transcriptome
Michael F. Berger
,
Joshua Z. Levin
,
Krishna Vijayendran
,
Andrey Sivachenko
,
Xian Adiconis
,
Jared Maguire
,
Laura A. Johnson
,
James Robinson
,
Roel G. Verhaak
,
Carrie Sougnez
,
Robert C. Onofrio
,
Liuda Ziaugra
,
Kristian Cibulskis
,
Elisabeth Laine
,
Jordi Barretina
,
Wendy Winckler
,
David E. Fisher
,
Gad Getz
,
Matthew Meyerson
,
David B. Jaffe
,
Stacey B. Gabriel
,
Eric S. Lander
,
Reinhard Dummer
,
Andreas Gnirke
,
Chad Nusbaum
,
and
Levi A. Garraway
Genome Res.
April 2010
20
:
413
-
427
;
Published in Advance
February 23, 2010
,
doi:
10.1101/gr.103697.109
Abstract
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RESOURCE
:
ALLPATHS: De novo assembly of whole-genome shotgun microreads
Jonathan Butler
,
Iain MacCallum
,
Michael Kleber
,
Ilya A. Shlyakhter
,
Matthew K. Belmonte
,
Eric S. Lander
,
Chad Nusbaum
,
and
David B. Jaffe
Genome Res.
May 2008
18
:
810
-
820
;
Published in Advance
March 13, 2008
,
doi:
10.1101/gr.7337908
Abstract
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Methods
:
Quality scores and SNP detection in sequencing-by-synthesis systems
William Brockman
,
Pablo Alvarez
,
Sarah Young
,
Manuel Garber
,
Georgia Giannoukos
,
William L. Lee
,
Carsten Russ
,
Eric S. Lander
,
Chad Nusbaum
,
and
David B. Jaffe
Genome Res.
May 2008
18
:
763
-
770
;
Published in Advance
January 22, 2008
,
doi:
10.1101/gr.070227.107
Abstract
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RESOURCE
:
28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
Webb Miller
,
Kate Rosenbloom
,
Ross C. Hardison
,
Minmei Hou
,
James Taylor
,
Brian Raney
,
Richard Burhans
,
David C. King
,
Robert Baertsch
,
Daniel Blankenberg
,
Sergei L. Kosakovsky Pond
,
Anton Nekrutenko
,
Belinda Giardine
,
Robert S. Harris
,
Svitlana Tyekucheva
,
Mark Diekhans
,
Thomas H. Pringle
,
William J. Murphy
,
Arthur Lesk
,
George M. Weinstock
,
Kerstin Lindblad-Toh
,
Richard A. Gibbs
,
Eric S. Lander
,
Adam Siepel
,
David Haussler
,
and
W. James Kent
Genome Res.
December 2007
17
:
1797
-
1808
;
Published in Advance
November 5, 2007
,
doi:
10.1101/gr.6761107
Abstract
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ARTICLE
:
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Elliott H. Margulies
,
Gregory M. Cooper
,
George Asimenos
,
Daryl J. Thomas
,
Colin N. Dewey
,
Adam Siepel
,
Ewan Birney
,
Damian Keefe
,
Ariel S. Schwartz
,
Minmei Hou
,
James Taylor
,
Sergey Nikolaev
,
Juan I. Montoya-Burgos
,
Ari Löytynoja
,
Simon Whelan
,
Fabio Pardi
,
Tim Massingham
,
James B. Brown
,
Peter Bickel
,
Ian Holmes
,
James C. Mullikin
,
Abel Ureta-Vidal
,
Benedict Paten
,
Eric A. Stone
,
Kate R. Rosenbloom
,
W. James Kent
,
Gerard G. Bouffard
,
Xiaobin Guan
,
Nancy F. Hansen
,
Jacquelyn R. Idol
,
Valerie V.B. Maduro
,
Baishali Maskeri
,
Jennifer C. McDowell
,
Morgan Park
,
Pamela J. Thomas
,
Alice C. Young
,
Robert W. Blakesley
,
Donna M. Muzny
,
Erica Sodergren
,
David A. Wheeler
,
Kim C. Worley
,
Huaiyang Jiang
,
George M. Weinstock
,
Richard A. Gibbs
,
Tina Graves
,
Robert Fulton
,
Elaine R. Mardis
,
Richard K. Wilson
,
Michele Clamp
,
James Cuff
,
Sante Gnerre
,
David B. Jaffe
,
Jean L. Chang
,
Kerstin Lindblad-Toh
,
Eric S. Lander
,
Angie Hinrichs
,
Heather Trumbower
,
Hiram Clawson
,
Ann Zweig
,
Robert M. Kuhn
,
Galt Barber
,
Rachel Harte
,
Donna Karolchik
,
Matthew A. Field
,
Richard A. Moore
,
Carrie A. Matthewson
,
Jacqueline E. Schein
,
Marco A. Marra
,
Stylianos E. Antonarakis
,
Serafim Batzoglou
,
Nick Goldman
,
Ross Hardison
,
David Haussler
,
Webb Miller
,
Lior Pachter
,
Eric D. Green
,
and
Arend Sidow
Genome Res.
June 2007
17
:
760
-
774
;
doi:
10.1101/gr.6034307
Abstract
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Methods
:
Assembly of polymorphic genomes: Algorithms and application to
Ciona savignyi
Jade P. Vinson
,
David B. Jaffe
,
Keith O'Neill
,
Elinor K. Karlsson
,
Nicole Stange-Thomann
,
Scott Anderson
,
Jill P. Mesirov
,
Nori Satoh
,
Yutaka Satou
,
Chad Nusbaum
,
Bruce Birren
,
James E. Galagan
,
and
Eric S. Lander
Genome Res.
August 2005
15
:
1127
-
1135
;
doi:
10.1101/gr.3722605
Abstract
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METHODS
:
Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2
David B. Jaffe
,
Jonathan Butler
,
Sante Gnerre
,
Evan Mauceli
,
Kerstin Lindblad-Toh
,
Jill P. Mesirov
,
Michael C. Zody
,
and
Eric S. Lander
Genome Res.
January 1, 2003
13
:
91
-
96
;
doi:
10.1101/gr.828403
Abstract
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LETTER
:
Lymphopenia in the BB Rat Model of Type 1 Diabetes is Due to a Mutation in a Novel Immune-Associated Nucleotide (
Ian
)-Related Gene
Armand J. MacMurray
,
Daniel H. Moralejo
,
Anne E. Kwitek
,
Elizabeth A. Rutledge
,
Brian Van Yserloo
,
Paul Gohlke
,
Sara J. Speros
,
Ben Snyder
,
Jonathan Schaefer
,
Sabine Bieg
,
Jianjie Jiang
,
Ruth A. Ettinger
,
Jessica Fuller
,
Terri L. Daniels
,
Anna Pettersson
,
Kimberly Orlebeke
,
Bruce Birren
,
Howard J. Jacob
,
Eric S. Lander
,
and
Åke Lernmark
Genome Res.
July 1, 2002
12
:
1029
-
1039
;
doi:
10.1101/gr.412702
Abstract
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