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Method: Accurate estimation of intraspecific microbial gene content variation in metagenomic data with MIDAS v3 and StrainPGC

Byron J. Smith,
Chunyu Zhao,
Veronika Dubinkina,
Xiaofan Jin,
Liron Zahavi,
Saar Shoer,
Jacqueline Moltzau-Anderson,
Eran Segal,
and Katherine S. Pollard

Genome Res. May 2025 35: 1247-1260; Published in Advance April 10, 2025, doi:10.1101/gr.279543.124

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Research: Sequence determinants of polyadenylation-mediated regulation

Ilya Vainberg Slutskin,
Adina Weinberger,
and Eran Segal

Genome Res. October 2019 29: 1635-1647; Published in Advance September 17, 2019, doi:10.1101/gr.247312.118

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Research: Systematic interrogation of human promoters

Shira Weingarten-Gabbay,
Ronit Nir,
Shai Lubliner,
Eilon Sharon,
Yael Kalma,
Adina Weinberger,
and Eran Segal

Genome Res. February 2019 29: 171-183; Published in Advance January 8, 2019, doi:10.1101/gr.236075.118

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Corrigendum: Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk,
Eilon Sharon,
Maya Lotan-Pompan,
Adina Weinberger,
Eran Segal,
and Lucas B. Carey

Genome Res. March 2017 27: 500; doi:10.1101/gr.220574.117

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Research: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

David van Dijk,
Eilon Sharon,
Maya Lotan-Pompan,
Adina Weinberger,
Eran Segal,
and Lucas B. Carey

Genome Res. January 2017 27: 87-94; Published in Advance December 13, 2016, doi:10.1101/gr.212316.116

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Research: Noise in gene expression is coupled to growth rate

Leeat Keren,
David van Dijk,
Shira Weingarten-Gabbay,
Dan Davidi,
Ghil Jona,
Adina Weinberger,
Ron Milo,
and Eran Segal

Genome Res. December 2015 25: 1893-1902; Published in Advance September 9, 2015, doi:10.1101/gr.191635.115

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Corrigendum: Corrigendum: Unraveling determinants of transcription factor binding outside the core binding site

Michal Levo,
Einat Zalckvar,
Eilon Sharon,
Ana Carolina Dantas Machado,
Yael Kalma,
Maya Lotan-Pompan,
Adina Weinberger,
Zohar Yakhini,
Remo Rohs,
and Eran Segal

Genome Res. September 2015 25: 1410.2

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Research: Core promoter sequence in yeast is a major determinant of expression level

Shai Lubliner,
Ifat Regev,
Maya Lotan-Pompan,
Sarit Edelheit,
Adina Weinberger,
and Eran Segal

Genome Res. July 2015 25: 1008-1017; Published in Advance May 12, 2015, doi:10.1101/gr.188193.114

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Method: Unraveling determinants of transcription factor binding outside the core binding site

Michal Levo,
Einat Zalckvar,
Eilon Sharon,
Ana Carolina Dantas Machado,
Yael Kalma,
Maya Lotam-Pompan,
Adina Weinberger,
Zohar Yakhini,
Remo Rohs,
and Eran Segal

Genome Res. July 2015 25: 1018-1029; Published in Advance March 11, 2015, doi:10.1101/gr.185033.114

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Research: Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters

Danny Zeevi,
Shai Lubliner,
Maya Lotan-Pompan,
Eran Hodis,
Rita Vesterman,
Adina Weinberger,
and Eran Segal

Genome Res. December 2014 24: 1991-1999; Published in Advance October 7, 2014, doi:10.1101/gr.179259.114

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