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Elliott H. Margulies
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:
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
Michael A. Eberle
,
Epameinondas Fritzilas
,
Peter Krusche
,
Morten Källberg
,
Benjamin L. Moore
,
Mitchell A. Bekritsky
,
Zamin Iqbal
,
Han-Yu Chuang
,
Sean J. Humphray
,
Aaron L. Halpern
,
Semyon Kruglyak
,
Elliott H. Margulies
,
Gil McVean
,
and
David R. Bentley
Genome Res.
January 2017
27
:
157
-
164
;
Published in Advance
November 30, 2016
,
doi:
10.1101/gr.210500.116
Abstract
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Research
:
Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites
Amber Hogart
,
Jens Lichtenberg
,
Subramanian S. Ajay
,
Stacie Anderson
,
NIH Intramural Sequencing Center
,
Elliott H. Margulies
,
and
David M. Bodine
Genome Res.
August 2012
22
:
1407
-
1418
;
Published in Advance
June 8, 2012
,
doi:
10.1101/gr.132878.111
Abstract
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Method
:
Accurate and comprehensive sequencing of personal genomes
Subramanian S. Ajay
,
Stephen C.J. Parker
,
Hatice Ozel Abaan
,
Karin V. Fuentes Fajardo
,
and
Elliott H. Margulies
Genome Res.
September 2011
21
:
1498
-
1505
;
Published in Advance
July 19, 2011
,
doi:
10.1101/gr.123638.111
Abstract
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Method
:
Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing
Jamie K. Teer
,
Lori L. Bonnycastle
,
Peter S. Chines
,
Nancy F. Hansen
,
Natsuyo Aoyama
,
Amy J. Swift
,
Hatice Ozel Abaan
,
Thomas J. Albert
,
NISC Comparative Sequencing Program
,
Elliott H. Margulies
,
Eric D. Green
,
Francis S. Collins
,
James C. Mullikin
,
and
Leslie G. Biesecker
Genome Res.
October 2010
20
:
1420
-
1431
;
Published in Advance
September 1, 2010
,
doi:
10.1101/gr.106716.110
Abstract
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Methods
:
A new strategy for genome assembly using short sequence reads and reduced representation libraries
Andrew L. Young
,
Hatice Ozel Abaan
,
Daniel Zerbino
,
James C. Mullikin
,
Ewan Birney
,
and
Elliott H. Margulies
Genome Res.
February 2010
20
:
249
-
256
;
doi:
10.1101/gr.097956.109
Abstract
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COMMENTARY
:
Confidence in comparative genomics
Elliott H. Margulies
Genome Res.
February 2008
18
:
199
-
200
;
doi:
10.1101/gr.7228008
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ARTICLE
:
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Elliott H. Margulies
,
Gregory M. Cooper
,
George Asimenos
,
Daryl J. Thomas
,
Colin N. Dewey
,
Adam Siepel
,
Ewan Birney
,
Damian Keefe
,
Ariel S. Schwartz
,
Minmei Hou
,
James Taylor
,
Sergey Nikolaev
,
Juan I. Montoya-Burgos
,
Ari Löytynoja
,
Simon Whelan
,
Fabio Pardi
,
Tim Massingham
,
James B. Brown
,
Peter Bickel
,
Ian Holmes
,
James C. Mullikin
,
Abel Ureta-Vidal
,
Benedict Paten
,
Eric A. Stone
,
Kate R. Rosenbloom
,
W. James Kent
,
Gerard G. Bouffard
,
Xiaobin Guan
,
Nancy F. Hansen
,
Jacquelyn R. Idol
,
Valerie V.B. Maduro
,
Baishali Maskeri
,
Jennifer C. McDowell
,
Morgan Park
,
Pamela J. Thomas
,
Alice C. Young
,
Robert W. Blakesley
,
Donna M. Muzny
,
Erica Sodergren
,
David A. Wheeler
,
Kim C. Worley
,
Huaiyang Jiang
,
George M. Weinstock
,
Richard A. Gibbs
,
Tina Graves
,
Robert Fulton
,
Elaine R. Mardis
,
Richard K. Wilson
,
Michele Clamp
,
James Cuff
,
Sante Gnerre
,
David B. Jaffe
,
Jean L. Chang
,
Kerstin Lindblad-Toh
,
Eric S. Lander
,
Angie Hinrichs
,
Heather Trumbower
,
Hiram Clawson
,
Ann Zweig
,
Robert M. Kuhn
,
Galt Barber
,
Rachel Harte
,
Donna Karolchik
,
Matthew A. Field
,
Richard A. Moore
,
Carrie A. Matthewson
,
Jacqueline E. Schein
,
Marco A. Marra
,
Stylianos E. Antonarakis
,
Serafim Batzoglou
,
Nick Goldman
,
Ross Hardison
,
David Haussler
,
Webb Miller
,
Lior Pachter
,
Eric D. Green
,
and
Arend Sidow
Genome Res.
June 2007
17
:
760
-
774
;
doi:
10.1101/gr.6034307
Abstract
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Methods
:
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
Gregory E. Crawford
,
Ingeborg E. Holt
,
James Whittle
,
Bryn D. Webb
,
Denise Tai
,
Sean Davis
,
Elliott H. Margulies
,
YiDong Chen
,
John A. Bernat
,
David Ginsburg
,
Daixing Zhou
,
Shujun Luo
,
Thomas J. Vasicek
,
Mark J. Daly
,
Tyra G. Wolfsberg
,
and
Francis S. Collins
Genome Res.
January 2006
16
:
123
-
131
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4074106
Abstract
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ARTICLE
:
Identification and Characterization of Multi-Species Conserved Sequences
Elliott H. Margulies
,
Mathieu Blanchette
,
NISC Comparative Sequencing Program
,
David Haussler
,
and
Eric D. Green
Genome Res.
December 2003
13
:
2507
-
2518
;
doi:
10.1101/gr.1602203
Abstract
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LETTER
:
A Comparative Molecular Analysis of Developing Mouse Forelimbs and Hindlimbs Using Serial Analysis of Gene Expression (SAGE)
Elliott H. Margulies
,
Sharon L.R. Kardia
,
and
Jeffrey W. Innis
Genome Res.
October 1, 2001
11
:
1686
-
1698
;
Published in Advance
September 20, 2001
,
doi:
10.1101/gr.192601
Abstract
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