Searching journal content for Elaine R. Mardis in author.

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  1. Research: Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma
    • David H. Gutmann,
    • Michael D. McLellan,
    • Ibrahim Hussain,
    • John W. Wallis,
    • Lucinda L. Fulton,
    • Robert S. Fulton,
    • Vincent Magrini,
    • Ryan Demeter,
    • Todd Wylie,
    • Cyriac Kandoth,
    • Jeffrey R. Leonard,
    • Abhijit Guha,
    • Christopher A. Miller,
    • Li Ding,
    • and Elaine R. Mardis
    Genome Res. March 2013 23: 431-439; Published in Advance December 5, 2012, doi:10.1101/gr.142604.112
  2. Resource: MuSiC: Identifying mutational significance in cancer genomes
    • Nathan D. Dees,
    • Qunyuan Zhang,
    • Cyriac Kandoth,
    • Michael C. Wendl,
    • William Schierding,
    • Daniel C. Koboldt,
    • Thomas B. Mooney,
    • Matthew B. Callaway,
    • David Dooling,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • and Li Ding
    Genome Res. August 2012 22: 1589-1598; Published in Advance July 3, 2012, doi:10.1101/gr.134635.111
  3. Resource: VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
    • Daniel C. Koboldt,
    • Qunyuan Zhang,
    • David E. Larson,
    • Dong Shen,
    • Michael D. McLellan,
    • Ling Lin,
    • Christopher A. Miller,
    • Elaine R. Mardis,
    • Li Ding,
    • and Richard K. Wilson
    Genome Res. March 2012 22: 568-576; Published in Advance February 2, 2012, doi:10.1101/gr.129684.111
  4. Method: Biome representational in silico karyotyping
    • Valliammai Muthappan,
    • Aaron Y. Lee,
    • Tamara L. Lamprecht,
    • Lakshmi Akileswaran,
    • Suzanne M. Dintzis,
    • Choli Lee,
    • Vincent Magrini,
    • Elaine R. Mardis,
    • Jay Shendure,
    • and Russell N. Van Gelder
    Genome Res. April 2011 21: 626-633; Published in Advance February 10, 2011, doi:10.1101/gr.115758.110
  5. Method: Next-generation sequencing identifies the natural killer cell microRNA transcriptome
    • Todd A. Fehniger,
    • Todd Wylie,
    • Elizabeth Germino,
    • Jeffrey W. Leong,
    • Vincent J. Magrini,
    • Sunita Koul,
    • Catherine R. Keppel,
    • Stephanie E. Schneider,
    • Daniel C. Koboldt,
    • Ryan P. Sullivan,
    • Michael E. Heinz,
    • Seth D. Crosby,
    • Rakesh Nagarajan,
    • Giridharan Ramsingh,
    • Daniel C. Link,
    • Timothy J. Ley,
    • and Elaine R. Mardis
    Genome Res. November 2010 20: 1590-1604; Published in Advance October 8, 2010, doi:10.1101/gr.107995.110
  6. LETTER: Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites
    • Santhosh Girirajan,
    • Lin Chen,
    • Tina Graves,
    • Tomas Marques-Bonet,
    • Mario Ventura,
    • Catrina Fronick,
    • Lucinda Fulton,
    • Mariano Rocchi,
    • Robert S. Fulton,
    • Richard K. Wilson,
    • Elaine R. Mardis,
    • and Evan E. Eichler
    Genome Res. February 2009 19: 178-190; Published in Advance November 24, 2008, doi:10.1101/gr.086041.108
  7. LETTER: Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    • Ryan D. Morin,
    • Gozde Aksay,
    • Elena Dolgosheina,
    • H. Alexander Ebhardt,
    • Vincent Magrini,
    • Elaine R. Mardis,
    • S. Cenk Sahinalp,
    • and Peter J. Unrau
    Genome Res. April 2008 18: 571-584; Published in Advance March 6, 2008, doi:10.1101/gr.6897308
  8. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  9. RESOURCE: PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data
    • Ken Chen,
    • Michael D. McLellan,
    • Li Ding,
    • Michael C. Wendl,
    • Yumi Kasai,
    • Richard K. Wilson,
    • and Elaine R. Mardis
    Genome Res. May 2007 17: 659-666; Published in Advance April 6, 2007, doi:10.1101/gr.6151507
  10. RESOURCE: Molecular refinement of gibbon genome rearrangements
    • Roberta Roberto,
    • Oronzo Capozzi,
    • Richard K. Wilson,
    • Elaine R. Mardis,
    • Mariana Lomiento,
    • Eray Tuzun,
    • Ze Cheng,
    • Alan R. Mootnick,
    • Nicoletta Archidiacono,
    • Mariano Rocchi,
    • and Evan E. Eichler
    Genome Res. February 2007 17: 249-257; Published in Advance December 21, 2006, doi:10.1101/gr.6052507
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