Searching journal content for Edward M. Rubin in author.

Displaying results 1-10 of 15
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  1. Research: Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome
    • Weibing Shi,
    • Christina D. Moon,
    • Sinead C. Leahy,
    • Dongwan Kang,
    • Jeff Froula,
    • Sandra Kittelmann,
    • Christina Fan,
    • Samuel Deutsch,
    • Dragana Gagic,
    • Henning Seedorf,
    • William J. Kelly,
    • Renee Atua,
    • Carrie Sang,
    • Priya Soni,
    • Dong Li,
    • Cesar S. Pinares-Patiño,
    • John C. McEwan,
    • Peter H. Janssen,
    • Feng Chen,
    • Axel Visel,
    • Zhong Wang,
    • Graeme T. Attwood,
    • and Edward M. Rubin
    Genome Res. September 2014 24: 1517-1525; Published in Advance June 6, 2014, doi:10.1101/gr.168245.113
  2. Research: Tissue-specific SMARCA4 binding at active and repressed regulatory elements during embryogenesis
    • Catia Attanasio,
    • Alex S. Nord,
    • Yiwen Zhu,
    • Matthew J. Blow,
    • Simon C. Biddie,
    • Eric M. Mendenhall,
    • Jesse Dixon,
    • Crystal Wright,
    • Roya Hosseini,
    • Jennifer A. Akiyama,
    • Amy Holt,
    • Ingrid Plajzer-Frick,
    • Malak Shoukry,
    • Veena Afzal,
    • Bing Ren,
    • Bradley E. Bernstein,
    • Edward M. Rubin,
    • Axel Visel,
    • and Len A. Pennacchio
    Genome Res. June 2014 24: 920-929; Published in Advance April 21, 2014, doi:10.1101/gr.168930.113
  3. Method: Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
    • Jakob Skou Pedersen,
    • Eivind Valen,
    • Amhed M. Vargas Velazquez,
    • Brian J. Parker,
    • Morten Rasmussen,
    • Stinus Lindgreen,
    • Berit Lilje,
    • Desmond J. Tobin,
    • Theresa K. Kelly,
    • Søren Vang,
    • Robin Andersson,
    • Peter A. Jones,
    • Cindi A. Hoover,
    • Alexei Tikhonov,
    • Egor Prokhortchouk,
    • Edward M. Rubin,
    • Albin Sandelin,
    • M. Thomas P. Gilbert,
    • Anders Krogh,
    • Eske Willerslev,
    • and Ludovic Orlando
    Genome Res. March 2014 24: 454-466; Published in Advance December 3, 2013, doi:10.1101/gr.163592.113
    OPEN ACCESS ARTICLE
  4. Resource: A vast collection of microbial genes that are toxic to bacteria
    • Aya Kimelman,
    • Asaf Levy,
    • Hila Sberro,
    • Shahar Kidron,
    • Azita Leavitt,
    • Gil Amitai,
    • Deborah R. Yoder-Himes,
    • Omri Wurtzel,
    • Yiwen Zhu,
    • Edward M. Rubin,
    • and Rotem Sorek
    Genome Res. April 2012 22: 802-809; Published in Advance February 1, 2012, doi:10.1101/gr.133850.111
  5. Methods: Identification of ancient remains through genomic sequencing
    • Matthew J. Blow,
    • Tao Zhang,
    • Tanja Woyke,
    • Camilla F. Speller,
    • Andrei Krivoshapkin,
    • Dongya Y. Yang,
    • Anatoly Derevianko,
    • and Edward M. Rubin
    Genome Res. August 2008 18: 1347-1353; Published in Advance April 21, 2008, doi:10.1101/gr.076091.108
  6. LETTER: Close sequence comparisons are sufficient to identify human cis-regulatory elements
    • Shyam Prabhakar,
    • Francis Poulin,
    • Malak Shoukry,
    • Veena Afzal,
    • Edward M. Rubin,
    • Olivier Couronne,
    • and Len A. Pennacchio
    Genome Res. July 2006 16: 855-863; Published in Advance June 12, 2006, doi:10.1101/gr.4717506
  7. PERSPECTIVE: Application of sequence-based methods in human microbial ecology
    • Li Weng,
    • Edward M. Rubin,
    • and James Bristow
    Genome Res. March 2006 16: 316-322; Published in Advance February 6, 2006, doi:10.1101/gr.3676406
  8. LETTER: Genomic deletion of a long-range bone enhancer misregulates sclerostin in Van Buchem disease
    • Gabriela G. Loots,
    • Michaela Kneissel,
    • Hansjoerg Keller,
    • Myma Baptist,
    • Jessie Chang,
    • Nicole M. Collette,
    • Dmitriy Ovcharenko,
    • Ingrid Plajzer-Frick,
    • and Edward M. Rubin
    Genome Res. July 2005 15: 928-935; Published in Advance June 17, 2005, doi:10.1101/gr.3437105
    OPEN ACCESS ARTICLE
  9. LETTER: Intraspecies sequence comparisons for annotating genomes
    • Dario Boffelli,
    • Claire V. Weer,
    • Li Weng,
    • Keith D. Lewis,
    • Malak I. Shoukry,
    • Lior Pachter,
    • David N. Keys,
    • and Edward M. Rubin
    Genome Res. December 2004 14: 2406-2411; Published in Advance November 15, 2004, doi:10.1101/gr.3199704
  10. Methods: Automated Whole-Genome Multiple Alignment of Rat, Mouse, and Human
    • Michael Brudno,
    • Alexander Poliakov,
    • Asaf Salamov,
    • Gregory M. Cooper,
    • Arend Sidow,
    • Edward M. Rubin,
    • Victor Solovyev,
    • Serafim Batzoglou,
    • and Inna Dubchak
    Genome Res. April 2004 14: 685-692; doi:10.1101/gr.2067704
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