Searching journal content for E S Lander in author.

Displaying results 1-10 of 17
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  1. Research: Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution
    • Hoon Kim,
    • Siyuan Zheng,
    • Seyed S. Amini,
    • Selene M. Virk,
    • Tom Mikkelsen,
    • Daniel J. Brat,
    • Jonna Grimsby,
    • Carrie Sougnez,
    • Florian Muller,
    • Jian Hu,
    • Andrew E. Sloan,
    • Mark L. Cohen,
    • Erwin G. Van Meir,
    • Lisa Scarpace,
    • Peter W. Laird,
    • John N. Weinstein,
    • Eric S. Lander,
    • Stacey Gabriel,
    • Gad Getz,
    • Matthew Meyerson,
    • Lynda Chin,
    • Jill S. Barnholtz-Sloan,
    • and Roel G.W. Verhaak
    Genome Res. March 2015 25: 316-327; Published in Advance February 3, 2015, doi:10.1101/gr.180612.114
  2. Research: Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability
    • Yotam Drier,
    • Michael S. Lawrence,
    • Scott L. Carter,
    • Chip Stewart,
    • Stacey B. Gabriel,
    • Eric S. Lander,
    • Matthew Meyerson,
    • Rameen Beroukhim,
    • and Gad Getz
    Genome Res. February 2013 23: 228-235; Published in Advance November 2, 2012, doi:10.1101/gr.141382.112
    OPEN ACCESS ARTICLE
  3. Research: Integrative analysis of the melanoma transcriptome
    • Michael F. Berger,
    • Joshua Z. Levin,
    • Krishna Vijayendran,
    • Andrey Sivachenko,
    • Xian Adiconis,
    • Jared Maguire,
    • Laura A. Johnson,
    • James Robinson,
    • Roel G. Verhaak,
    • Carrie Sougnez,
    • Robert C. Onofrio,
    • Liuda Ziaugra,
    • Kristian Cibulskis,
    • Elisabeth Laine,
    • Jordi Barretina,
    • Wendy Winckler,
    • David E. Fisher,
    • Gad Getz,
    • Matthew Meyerson,
    • David B. Jaffe,
    • Stacey B. Gabriel,
    • Eric S. Lander,
    • Reinhard Dummer,
    • Andreas Gnirke,
    • Chad Nusbaum,
    • and Levi A. Garraway
    Genome Res. April 2010 20: 413-427; Published in Advance February 23, 2010, doi:10.1101/gr.103697.109
    OPEN ACCESS ARTICLE
  4. RESOURCE: ALLPATHS: De novo assembly of whole-genome shotgun microreads
    • Jonathan Butler,
    • Iain MacCallum,
    • Michael Kleber,
    • Ilya A. Shlyakhter,
    • Matthew K. Belmonte,
    • Eric S. Lander,
    • Chad Nusbaum,
    • and David B. Jaffe
    Genome Res. May 2008 18: 810-820; Published in Advance March 13, 2008, doi:10.1101/gr.7337908
  5. Methods: Quality scores and SNP detection in sequencing-by-synthesis systems
    • William Brockman,
    • Pablo Alvarez,
    • Sarah Young,
    • Manuel Garber,
    • Georgia Giannoukos,
    • William L. Lee,
    • Carsten Russ,
    • Eric S. Lander,
    • Chad Nusbaum,
    • and David B. Jaffe
    Genome Res. May 2008 18: 763-770; Published in Advance January 22, 2008, doi:10.1101/gr.070227.107
  6. RESOURCE: 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    • Webb Miller,
    • Kate Rosenbloom,
    • Ross C. Hardison,
    • Minmei Hou,
    • James Taylor,
    • Brian Raney,
    • Richard Burhans,
    • David C. King,
    • Robert Baertsch,
    • Daniel Blankenberg,
    • Sergei L. Kosakovsky Pond,
    • Anton Nekrutenko,
    • Belinda Giardine,
    • Robert S. Harris,
    • Svitlana Tyekucheva,
    • Mark Diekhans,
    • Thomas H. Pringle,
    • William J. Murphy,
    • Arthur Lesk,
    • George M. Weinstock,
    • Kerstin Lindblad-Toh,
    • Richard A. Gibbs,
    • Eric S. Lander,
    • Adam Siepel,
    • David Haussler,
    • and W. James Kent
    Genome Res. December 2007 17: 1797-1808; Published in Advance November 5, 2007, doi:10.1101/gr.6761107
  7. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  8. Methods: Assembly of polymorphic genomes: Algorithms and application to Ciona savignyi
    • Jade P. Vinson,
    • David B. Jaffe,
    • Keith O'Neill,
    • Elinor K. Karlsson,
    • Nicole Stange-Thomann,
    • Scott Anderson,
    • Jill P. Mesirov,
    • Nori Satoh,
    • Yutaka Satou,
    • Chad Nusbaum,
    • Bruce Birren,
    • James E. Galagan,
    • and Eric S. Lander
    Genome Res. August 2005 15: 1127-1135; doi:10.1101/gr.3722605
  9. METHODS: Whole-Genome Sequence Assembly for Mammalian Genomes: Arachne 2
    • David B. Jaffe,
    • Jonathan Butler,
    • Sante Gnerre,
    • Evan Mauceli,
    • Kerstin Lindblad-Toh,
    • Jill P. Mesirov,
    • Michael C. Zody,
    • and Eric S. Lander
    Genome Res. January 1, 2003 13: 91-96; doi:10.1101/gr.828403
  10. LETTER: Lymphopenia in the BB Rat Model of Type 1 Diabetes is Due to a Mutation in a Novel Immune-Associated Nucleotide (Ian)-Related Gene
    • Armand J. MacMurray,
    • Daniel H. Moralejo,
    • Anne E. Kwitek,
    • Elizabeth A. Rutledge,
    • Brian Van Yserloo,
    • Paul Gohlke,
    • Sara J. Speros,
    • Ben Snyder,
    • Jonathan Schaefer,
    • Sabine Bieg,
    • Jianjie Jiang,
    • Ruth A. Ettinger,
    • Jessica Fuller,
    • Terri L. Daniels,
    • Anna Pettersson,
    • Kimberly Orlebeke,
    • Bruce Birren,
    • Howard J. Jacob,
    • Eric S. Lander,
    • and Åke Lernmark
    Genome Res. July 1, 2002 12: 1029-1039; doi:10.1101/gr.412702
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